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CHANGELOG.md

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Changelog

1.5.1 (2024-10-10)

Misc

1.5.0 (2024-10-09)

Misc

  • Add newsletter signup to bottom banner (SCE-29) (#1116) (1f0048f)
  • update playwright to pause animation (#1128) (284eb4f)

Features

  • scale bar for zoom (SCE-26, SCE-25, SCE-27) (#1125) (49e8d14)

1.4.2 (2024-09-26)

Misc

Bug Fixes

Tests

1.4.1 (2024-08-27)

Bug Fixes

1.4.0 (2024-08-23)

Misc

Features

1.3.0 (2024-08-16)

Misc

Features

Bug Fixes

Tests

1.2.0 (2024-08-07)

Misc

Features

Bug Fixes

Tests

1.1.1 (2024-07-15)

Misc

  • invoke smoke tests against every prod deploy (#1037) (b425a52)

Bug Fixes

1.1.0 (2024-07-15)

Misc

Features

Bug Fixes

1.0.1 (2024-07-02)

Bug Fixes

Misc

1.0.0 (2024-06-27)

Features

  • 70 add portal collection homepage to /config (#83) (8e0dd91)
  • 88 add dataset_id to the metadata endpoint (#93) (ae60d1b)
  • Add a Github Action that automatically closes stale PRs. (#647) (f15b4db)
  • add back navbar to all instances regardless of dataset metadata (#883) (4ca479d)
  • add cellxgene schema 3.0.0 fields to Standard Categories (#412) (b265fcf)
  • add cellxgene schema 3.0.0 fields to Standard Categories (#412) (#486) (6d25ccc)
  • Add correlation ids to logs to improve debugging (#606) (2540fd9)
  • add deployed_version endpoint (#588) (64b4979)
  • add DOCUMENTATION_CLICK_NAV for Documentation click (#546) (4d456b5)
  • add feature flags to explorer (#769) (b50116e)
  • add geneset initialization (#803) (0d204de)
  • add hotkeys for undo redo and remove buttons (#467) (fafc539)
  • add mypy to the server/common/utils directory (#672) (39b088d)
  • add new api rule for cellguide cxgs (#777) (790682b)
  • add publisher_metadata to the dataset metadata endpoint (#224) (24ba6e5)
  • add quick gene lookup functionality (#2250) (82de417)
  • add some structured support for mocking the dataset-metadata endpoint (#691) (d95b90d)
  • added add-gene-and-* analytics for issue 275 (#283) (21f0739)
  • analytics: 1631 Add analytics (#249) (8af586a)
  • Bump max zoom from 12 to 80 (#961) (1859de5)
  • census-spotlight: update navbar to new layout (#677) (9027420)
  • dataset metadata endpoint (#64) (6536f05)
  • Deep zoom (#929) (164aa76)
  • differential expression performance improvements (#234) (1e9965a)
  • diffexp returns two genesets (#2230) (28b526b)
  • download: include a continuous legend in image downloads (#878) (c44d9d9)
  • drop int64 fields from cxg_schema in the obs array (#653) (7a96def)
  • enable image capture and download of graph (#817) (c00d3ab)
  • Enable permissions to support happy shell (#349) (acd8932)
  • exclude observation join id from standard and author categories (#674) (8661a4e)
  • fix explorer API for handling subpaths in S3 (#792) (4ba67ac)
  • frontend geneset validation (#2258) (b714c18)
  • gene info cards (#298) (8cf1341)
  • geneset: save diff exp result as geneset (#2216) (a4050f1)
  • img: capture graph as a image for testing and user download (#796) (bb2735f)
  • include a legend image for categorical colorby (#884) (332644f)
  • include localhost and canary env as allowed origins for staging backend (#71) (8758ce5)
  • increase zoom limits by a factor of 4 (#577) (db5051d)
  • move continuous fields to the dataset drawer if there is a single value for all cells (#918) (055b24d)
  • Newsletter Banner (#601) (d99f066)
  • remove author and standard categories for cellguide cxgs and add singletons back (#795) (67502f6)
  • setup explorer on argus (#886) (a6ecee7)
  • side by side (#977) (bf2babc)
  • Spatial Mode User Story 1 (#805) (df7d42d)
  • spatial refactor (#852) (ffd7281)
  • spatial: analytics (#974) (9986a37)
  • split new cellguide cxg regex into another constant (#786) (b0e2793)
  • wmg: 3701 Remove beta tag (#545) (4028070)

Bug Fixes

  • 1001 No download image for minimized panel (#1004) (db0944e)
  • 104 dataframe histogram memoization (#116) (b0360b8)
  • 156 obsolete browsers (#159) (656b63e)
  • 270 analytics expand events (#271) (6a75d87)
  • 73 - add 2.0.0 to the recognized FE versions (#74) (a16acc9)
  • 84 Do not cache index.html (#86) (8bc3e06)
  • 858 jason bug 2 (#948) (6beebe8)
  • 936 embedding cell count (#942) (65d1281)
  • add census link in explorer (#625) (202a90f)
  • add max_age to immutable caches (#205) (52579c5)
  • add missing ECS folder (#526) (7d91243)
  • add placeholder test so suite doesn't fail (#2233) (7ed53c0)
  • add screenCap to cached props for diffing during render check (#835) (056704f)
  • Add services to happy config (#409) (90f976e)
  • Allow Connection to Hubspot (#633) (b8f9f5e)
  • analytics: #262 adds event payloads (#264) (be75ba1)
  • Assume NavBar is present when calculating height of explorer initially. (#502) (92cbcf0)
  • Assume navbar present by default and only remove padding if dataset metadata errors (#517) (fde15ae)
  • change path for static font files (#370) (c93f3b3)
  • collection_url prefix in dataset-metadata (#140) (9558db3)
  • Continuous legend properly disappears after coloring by continuous metadata and subsequently coloring by anything else (#513) (fa59fa5)
  • convert sparse numpy matrix to ndarray (#2271) (5f976cc)
  • Correctly load image underlay when initial layout is spatial (#859) (2cace76)
  • dataset metadata response parsing (#43) (084dc5c)
  • dataset-metadata private collections call (#127) (79e4424)
  • decrease the topN count explicitly on hosted (#2320) (bbf1950)
  • disable FE auth testing on compatibility tests (#2377) (925b785)
  • disable portion of noisy env screenshots (#75) (47b206a)
  • Docker-compose specify platform to get around arm vs amd arch mismatches (#241) (5c2a4b3)
  • docker: explicitly install node (#307) (c3d4fd8)
  • docker: fix script url (#308) (a05db9d)
  • don't run lint with --fix on push tests (#2273) (1998c0a)
  • dont cache dataset metadata (#177) (b4c4471)
  • e2e base url (#179) (3d240c8)
  • eb dir -> ecs dir (#524) (847141d)
  • empty object triggers spatial normalization (#973) (b50ccbf)
  • enable deployment on rdev (#299) (10fe915)
  • envfile in deploy-happy-stack (#612) (1e2e1b2)
  • exclude specific ontology term id keys (#953) (5e9bfec)
  • explicitly depend on favicons (#2143) (f36d889)
  • explorer: bundle images (#707) (2c60abf)
  • explorer: enable Safari and fix bundled image path (#708) (80fc7c6)
  • explorer: filter out where feature_is_filtered is true (#684) (cd045db)
  • fail happy deploy if service does not start successfully (#663) (7796ef7)
  • fix lasso canceling by removing definition checking (#848) (188c4de)
  • Fix menubar overflow by removing undo redo, some letters, and umap icon (#466) (20251bb)
  • fix regex API prefix substitution for dataset selection (#807) (bd4f07a)
  • Fix squished side panel after download (#1006) (ead9c8a)
  • Fixed bug where continuous legend is appearing for categorical color-bys (#440) (fc35d0c)
  • Fixed issue where config was not generating properly due to CXG version upgrade (#492) (e0500d7)
  • Fixes missing breadcrumbs introduced in unified navbar update. (#465) (20227b1)
  • fixing a bug that occurs when there are more than 1000 categories (#462) (f35d88b)
  • Full fix QuickGene (#151) (7eb97f7)
  • gene info QA changes (#351) (24009c5)
  • hide navbar when seamless not enabled (#482) (5901e1e)
  • implemented temporary workaround suggested by TileDB. (#2251) (#58) (4d94a26)
  • invalidate metadata cache when dataset fails to load (#87) (db9f875)
  • linting (#559) (79b42e0)
  • make integration secret non-sensitive (ebb7d07)
  • make push rdev use happy go client (#336) (1b10f5e)
  • missing uns array returns error instead of None (#832) (f157e0c)
  • missing uns array returns error instead on None (f0d7c62)
  • Modify CSP to Allow Hubspot (#634) (c466aff)
  • navbar: WMG link (#449) (050e1f3)
  • no floating promises (#946) (f3d49fd)
  • override default so that issues are not marked as stale (#650) (af78145)
  • pin Wekzeug to 2.2.3 (#595) (7a9385d)
  • point to local server (#2274) (873b3a2)
  • reactivate strict slashes (#789) (5027bf2)
  • regen package-lock.json file to solve dependency issue in dev (#301) (4d58c23)
  • remove empty attribute from config (#821) (9a68bdb)
  • remove implicit state toggling for spatial underlay in favor of explicit state setting (#876) (a0a3322)
  • remove spaces in param setup (#2380) (3fdf5ca)
  • remove trailing slash from s3_uri (#198) (fdda2f4)
  • reset gene set colorScale on gene set deletion (#2264) (b8b1d0d)
  • return response caching (#199) (844c61f)
  • Revert quickGene partially (#149) (2414fd0)
  • same category and gene name coloring issues (#276) (e96a705)
  • server/requirements-dev.txt to reduce vulnerabilities (#2055) (09466a5)
  • set count to 15 for testing (#2324) (1ebde22)
  • spatial test and dataset (#881) (e1ef4a5)
  • spatial: use global api prefix for /spatial/meta calls (#822) (2e286ba)
  • thuang-fix-tsconfig-path (#2372) (fc60b2a)
  • treat boolean types as categoricals (#656) (4b43040)
  • unit tests and slight refactor (#877) (2a3b298)
  • update colorTable code so linear scan only happens once (#328) (c238e99)
  • update CSP to allow for image fetching from backend (#819) (d3ddc40)
  • update server version to 0.16.7 (#2276) (90da04b)
  • update spatial url condition (#967) (02db419)
  • upgrade github actions (#598) (4e30db8)
  • upgraded tiledb (#2251) (#44) (8d21a55)
  • upgraded tiledb and reverted workaround (#61) (#66) (6841c72)
  • use AppConfig to configure logging for server (#720) (1104f80)
  • use env specific secret (#2204) (265ccf3)
  • verify caching headers for dataset-metadata (#204) (a188c9e)
  • wrong integration secret in the rdev environment (#655) (89e0acb)
  • wrong path in start.sh (#522) (ea9f3e4)

Misc