chore: update spatial test dataset (#862)

Co-authored-by: Timmy Huang <thuang@chanzuckerberg.com>
chanzuckerberg · Mar 30, 2024 · 2d76056 · 2d76056
1 parent 2cace76
commit 2d76056
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Showing 293 changed files with 18 additions and 19 deletions.
diff --git a/client/__tests__/e2e/data.ts b/client/__tests__/e2e/data.ts
@@ -166,13 +166,13 @@ export const datasets = {
         "CD14-positive monocyte": "1",
         "CD8-positive, alpha-beta cytotoxic T cell": "8",
         "activated CD4-positive, alpha-beta T cell": "1",
+        adipocyte: "76",
         "cardiac pacemaker cell of sinoatrial node": "100",
         "dendritic cell, human": "7",
         "endocardial cell": "31",
         "endothelial cell": "15",
         "endothelial cell of artery": "14",
         "endothelial cell of lymphatic vessel": "2",
-        "fat cell": "76",
         "fibroblast of cardiac tissue": "842",
         "glial cell": "43",
         macrophage: "72",
@@ -191,8 +191,6 @@ export const datasets = {
     },
     continuous: {
       n_genes_by_counts: "int32",
-      log1p_n_genes_by_counts: "int32",
-      total_counts: "int32",
     },
     cellsets: {
       lasso: [
@@ -204,8 +202,8 @@ export const datasets = {
       categorical: [
         {
           metadata: "cell_type",
-          values: ["B cell", "fat cell"],
-          count: "77", // B cell 1 + fat cell 76
+          values: ["B cell", "glial cell"],
+          count: "44", // B cell 1 + glial cell 43
         },
       ],
       continuous: [
@@ -220,12 +218,12 @@ export const datasets = {
     diffexp: {
       category: "cell_type",
       cellset1: {
-        cellType: "fat cell",
+        cellType: "glial cell",
       },
       cellset2: {
         cellType: "mast cell",
       },
-      pop2Gene: "TPSB2",
+      pop2Gene: "WBP1L",
     },
 
     genes: {
@@ -237,7 +235,7 @@ export const datasets = {
         {
           kind: "categorical",
           metadata: "cell_type",
-          values: ["fat cell", "mast cell"],
+          values: ["glial cell", "mast cell"],
         },
       ],
       count: "332",
@@ -248,15 +246,15 @@ export const datasets = {
           "CD14-positive monocyte": "0",
           "CD8-positive, alpha-beta cytotoxic T cell": "0",
           "activated CD4-positive, alpha-beta T cell": "0",
+          adipocyte: "0",
           "cardiac pacemaker cell of sinoatrial node": "0",
           "dendritic cell, human": "0",
           "endocardial cell": "0",
           "endothelial cell": "0",
           "endothelial cell of artery": "0",
           "endothelial cell of lymphatic vessel": "0",
-          "fat cell": "76",
           "fibroblast of cardiac tissue": "0",
-          "glial cell": "0",
+          "glial cell": "43",
           macrophage: "0",
           "mast cell": "19",
           monocyte: "0",
@@ -273,7 +271,7 @@ export const datasets = {
       },
       lasso: {
         "coordinates-as-percent": { x1: 0.25, y1: 0.1, x2: 0.75, y2: 0.65 },
-        count: "95",
+        count: "62",
       },
     },
     scatter: {
@@ -319,12 +317,12 @@ export const datasets = {
       "gene-cell-count": "416",
     },
     brushOnGenesetMean: {
-      default: "74",
-      withSubset: "69",
+      default: "701",
+      withSubset: "634",
     },
     expandGeneAndBrush: {
-      default: "52",
-      withSubset: "49",
+      default: "362",
+      withSubset: "344",
     },
   },
 };
diff --git a/...-spatial-cxg-geneSET-crud-operations-and-interactions-whole-diffexp-1-chromium-darwin.txt b/...-spatial-cxg-geneSET-crud-operations-and-interactions-whole-diffexp-1-chromium-darwin.txt
diff --git a/...l-spatial-cxg-geneSET-crud-operations-and-interactions-whole-diffexp-1-chromium-linux.txt b/...l-spatial-cxg-geneSET-crud-operations-and-interactions-whole-diffexp-1-chromium-linux.txt
diff --git a/...-spatial-cxg-geneSET-crud-operations-and-interactions-whole-diffexp-2-chromium-darwin.txt b/...-spatial-cxg-geneSET-crud-operations-and-interactions-whole-diffexp-2-chromium-darwin.txt
diff --git a/...l-spatial-cxg-geneSET-crud-operations-and-interactions-whole-diffexp-2-chromium-linux.txt b/...l-spatial-cxg-geneSET-crud-operations-and-interactions-whole-diffexp-2-chromium-linux.txt
diff --git a/client/package.json b/client/package.json
@@ -15,6 +15,7 @@
     "e2e-dev": "CXG_URL_BASE=https://cellxgene.dev.single-cell.czi.technology playwright test",
     "e2e-stage": "CXG_URL_BASE=https://cellxgene.staging.single-cell.czi.technology playwright test",
     "e2e-prod": "CXG_URL_BASE=https://cellxgene.cziscience.com playwright test",
+    "e2e-copy-snapshots-to-linux": "for file in __tests__/e2e/e2e.test.ts-snapshots/*-darwin.txt; do cp \"$file\" \"${file/-darwin.txt/-linux.txt}\"; done",
     "fmt": "eslint --fix src __tests__",
     "lint": "eslint src __tests__ && npm run type-check",
     "prod": "npm run build -- configuration/webpack/webpack.config.prod.js",

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diff --git a/example-dataset/super-cool-spatial.cxg/super-cool-spatial(fix).cxg/emb/__tiledb_group.tdb b/example-dataset/super-cool-spatial.cxg/super-cool-spatial(fix).cxg/emb/__tiledb_group.tdb
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