Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

merge of master into dev/emc #128

Merged
merged 71 commits into from
Aug 27, 2021
Merged

merge of master into dev/emc #128

merged 71 commits into from
Aug 27, 2021

Commits on Mar 5, 2021

  1. Removing use of mpp_io_mod and fms_io_mod from the dycore code. Repla… 

    …cing the necessary functions with fms2_io_mod functions
    @laurenchilutti
    laurenchilutti committed Mar 5, 2021
    Configuration menu
    Copy the full SHA
    ca1066f View commit details
    Browse the repository at this point in the history

Commits on Mar 10, 2021

  1. Adding a call to set_filename_appendix so that nest is added to file… 

    …name when needed and removing unneccessary code in fv_io_mod
    @laurenchilutti
    laurenchilutti committed Mar 10, 2021
    Configuration menu
    Copy the full SHA
    c4d0928 View commit details
    Browse the repository at this point in the history

Commits on Mar 29, 2021

  1. remove trailiing spaces

    @bensonr
    bensonr committed Mar 29, 2021
    Configuration menu
    Copy the full SHA
    1485f91 View commit details
    Browse the repository at this point in the history

Commits on Mar 30, 2021

  1. Merge pull request NOAA-GFDL#89 from bensonr/master 

    remove trailiing spaces
    @laurenchilutti
    laurenchilutti authored Mar 30, 2021
    Configuration menu
    Copy the full SHA
    6775670 View commit details
    Browse the repository at this point in the history

Commits on Mar 31, 2021

  1. fixes missing argument in store_data for case where GFS_PHYS macro no… 

    …t enabled
    @bensonr
    bensonr committed Mar 31, 2021
    Configuration menu
    Copy the full SHA
    3b104ca View commit details
    Browse the repository at this point in the history

Commits on Apr 1, 2021

  1. Merge pull request NOAA-GFDL#90 from bensonr/fv_nggps_fix 

    fixes missing argument in store_data for case where GFS_PHYS macro no…
    @bensonr
    bensonr authored Apr 1, 2021
    Configuration menu
    Copy the full SHA
    0adbf6f View commit details
    Browse the repository at this point in the history

Commits on Apr 2, 2021

  1. add in test for do_cube_transform in fv_grid_tool::init_grid

    @bensonr
    bensonr committed Apr 2, 2021
    Configuration menu
    Copy the full SHA
    0c3a1ba View commit details
    Browse the repository at this point in the history

Commits on Apr 5, 2021

  1. Merge pull request NOAA-GFDL#91 from bensonr/cube_xform_fix 

    add in test for do_cube_transform in fv_grid_tool::init_grid
    @laurenchilutti
    laurenchilutti authored Apr 5, 2021
    Configuration menu
    Copy the full SHA
    5211985 View commit details
    Browse the repository at this point in the history

  2. fixes bug in regional bc time calculation in fv_tracer2d.F90

    @bensonr
    bensonr committed Apr 5, 2021
    Configuration menu
    Copy the full SHA
    84fb058 View commit details
    Browse the repository at this point in the history

  3. Merge pull request NOAA-GFDL#92 from bensonr/regional_time_fix 

    fixes bug in regional bc time calculation in fv_tracer2d.F90
    @laurenchilutti
    laurenchilutti authored Apr 5, 2021
    Configuration menu
    Copy the full SHA
    1b52517 View commit details
    Browse the repository at this point in the history

Commits on Apr 21, 2021

  1. Updating dimension string arrays to address GNU compilation errors.

    @laurenchilutti
    laurenchilutti committed Apr 21, 2021
    Configuration menu
    Copy the full SHA
    fe683c8 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into fms2_io_implementation

    @laurenchilutti
    laurenchilutti committed Apr 21, 2021
    Configuration menu
    Copy the full SHA
    fb96053 View commit details
    Browse the repository at this point in the history

Commits on Apr 29, 2021

  1. prepending INPUT/ to hrr_ctrl.nc and gfs_ctrl.nc in external_ic

    @laurenchilutti
    laurenchilutti committed Apr 29, 2021
    Configuration menu
    Copy the full SHA
    04a6d6e View commit details
    Browse the repository at this point in the history

Commits on Apr 30, 2021

  1. removing use fms_io_mod, only: write_version_number and keeping only … 

    …use fms_mod, only: write_version_number now.
    @laurenchilutti
    laurenchilutti committed Apr 30, 2021
    Configuration menu
    Copy the full SHA
    9fe919e View commit details
    Browse the repository at this point in the history

  2. Merge pull request NOAA-GFDL#98 from laurenchilutti/user/lec/fms20210… 

    …2beta1

Removing a duplicate use statement of FMS function "write_version_number"
    @bensonr
    bensonr authored Apr 30, 2021
    Configuration menu
    Copy the full SHA
    bbf67cd View commit details
    Browse the repository at this point in the history

Commits on May 3, 2021

  1. Merge branch 'master' into fms2_io_implementation

    @laurenchilutti
    laurenchilutti authored May 3, 2021
    Configuration menu
    Copy the full SHA
    22fa998 View commit details
    Browse the repository at this point in the history

Commits on May 4, 2021

  1. Adding pelist argument to some open_file calls, correcting some typos… 

    …, addressding Uriel's comments from PR#74
    @laurenchilutti
    laurenchilutti committed May 4, 2021
    Configuration menu
    Copy the full SHA
    9746100 View commit details
    Browse the repository at this point in the history

Commits on May 7, 2021

  1. correcting minor typo and using fv_io_register_axis rather than regis… 

    …ter_axis in fv_ada_nudge. Reintroducing flush function and updating namelist read in fv_diag_column
    @laurenchilutti
    laurenchilutti committed May 7, 2021
    Configuration menu
    Copy the full SHA
    35ee073 View commit details
    Browse the repository at this point in the history

Commits on May 10, 2021

  1. Merge pull request NOAA-GFDL#74 from laurenchilutti/fms2_io_implement… 

    …ation

Fms2 io implementation
    @laurenchilutti
    laurenchilutti authored May 10, 2021
    Configuration menu
    Copy the full SHA
    5d8ef5e View commit details
    Browse the repository at this point in the history

Commits on Jun 1, 2021

  1. Adding Issue Templates

    @laurenchilutti
    laurenchilutti committed Jun 1, 2021
    Configuration menu
    Copy the full SHA
    0f2c753 View commit details
    Browse the repository at this point in the history

Commits on Jun 3, 2021

  1. Merge pull request NOAA-GFDL#105 from laurenchilutti/master 

    Adding Issue Templates to Repository
    @laurenchilutti
    laurenchilutti authored Jun 3, 2021
    Configuration menu
    Copy the full SHA
    80903f7 View commit details
    Browse the repository at this point in the history

  2. Adding Code Style guide to the repository.

    @laurenchilutti
    laurenchilutti committed Jun 3, 2021
    Configuration menu
    Copy the full SHA
    a3f8a89 View commit details
    Browse the repository at this point in the history

Commits on Jun 9, 2021

  1. Updating driver/GFDL/atmosphere.F90 to match what was in dev/GFDL aft… 

    …er resolving merge conflicts
    @laurenchilutti
    laurenchilutti committed Jun 9, 2021
    Configuration menu
    Copy the full SHA
    9124fb7 View commit details
    Browse the repository at this point in the history

  2. fixes to driver/GFDL/atmosphere.F90

    @bensonr @laurenchilutti
    bensonr authored and laurenchilutti committed Jun 9, 2021
    Configuration menu
    Copy the full SHA
    1834cfb View commit details
    Browse the repository at this point in the history

  3. fix a few duplicate module uses and add back in a missing timer calip… 

    …er for FV_DIAG
    @bensonr @laurenchilutti
    bensonr authored and laurenchilutti committed Jun 9, 2021
    Configuration menu
    Copy the full SHA
    cc137d1 View commit details
    Browse the repository at this point in the history

  4. fixes typos in nudging codes

    @bensonr @laurenchilutti
    bensonr authored and laurenchilutti committed Jun 9, 2021
    Configuration menu
    Copy the full SHA
    1d8a0d9 View commit details
    Browse the repository at this point in the history

Commits on Jun 10, 2021

  1. Merge pull request NOAA-GFDL#108 from laurenchilutti/test_master 

    Dev/gfdl updates being brought back to master
    @laurenchilutti
    laurenchilutti authored Jun 10, 2021
    Configuration menu
    Copy the full SHA
    c32facc View commit details
    Browse the repository at this point in the history

Commits on Jun 14, 2021

  1. FV3 Documentation 

    Formatted PDF and source files for FV3 documentation.
    @lharris4
    lharris4 authored Jun 14, 2021
    Configuration menu
    Copy the full SHA
    91c8823 View commit details
    Browse the repository at this point in the history

Commits on Jun 15, 2021

  1. Merge pull request NOAA-GFDL#109 from lharris4/master 

    FV3 Documentation
    @laurenchilutti
    laurenchilutti authored Jun 15, 2021
    Configuration menu
    Copy the full SHA
    7685bbc View commit details
    Browse the repository at this point in the history

Commits on Jun 16, 2021

  1. Revision 1.0a

    @lharris4
    lharris4 authored Jun 16, 2021
    Configuration menu
    Copy the full SHA
    e22d8cc View commit details
    Browse the repository at this point in the history

  2. Merge pull request NOAA-GFDL#110 from lharris4/master 

    Revision 1.0a
    @laurenchilutti
    laurenchilutti authored Jun 16, 2021
    Configuration menu
    Copy the full SHA
    b656fef View commit details
    Browse the repository at this point in the history

Commits on Jun 17, 2021

  1. Merge branch 'NOAA-GFDL:master' into master

    @laurenchilutti
    laurenchilutti authored Jun 17, 2021
    Configuration menu
    Copy the full SHA
    4425e00 View commit details
    Browse the repository at this point in the history

  2. typo fix in fv_io.F90

    @laurenchilutti
    laurenchilutti committed Jun 17, 2021
    Configuration menu
    Copy the full SHA
    0cb7797 View commit details
    Browse the repository at this point in the history

  3. Documentation and defaults changes 

    Updated defaults for hord options to use 8 and 10, and removal of mention of hord = 9, which is now a different (experimental, unsupported) scheme.
    @lharris4
    lharris4 authored Jun 17, 2021
    Configuration menu
    Copy the full SHA
    1684458 View commit details
    Browse the repository at this point in the history

  4. Merge pull request NOAA-GFDL#106 from laurenchilutti/master 

    Adding Code Style guide to the repository.
    @laurenchilutti
    laurenchilutti authored Jun 17, 2021
    Configuration menu
    Copy the full SHA
    d417c1a View commit details
    Browse the repository at this point in the history

  5. Merge pull request NOAA-GFDL#111 from laurenchilutti/user/lec/fms2io_… 

    …fixes

Typo fix in fv_io.F90
    @laurenchilutti
    laurenchilutti authored Jun 17, 2021
    Configuration menu
    Copy the full SHA
    33f0f90 View commit details
    Browse the repository at this point in the history

  6. Delete fv3_technical.tex

    @lharris4
    lharris4 authored Jun 17, 2021
    Configuration menu
    Copy the full SHA
    46fa031 View commit details
    Browse the repository at this point in the history

  7. Delete fv3_technical.pdf

    @lharris4
    lharris4 authored Jun 17, 2021
    Configuration menu
    Copy the full SHA
    4b1a00e View commit details
    Browse the repository at this point in the history

  8. Add files via upload 

    *Corrected* update to FV3 documentation v1.0a
    @lharris4
    lharris4 authored Jun 17, 2021
    Configuration menu
    Copy the full SHA
    c77dca0 View commit details
    Browse the repository at this point in the history

  9. Merge pull request NOAA-GFDL#112 from lharris4/master 

    Documentation and defaults changes
    @bensonr
    bensonr authored Jun 17, 2021
    Configuration menu
    Copy the full SHA
    b8599fe View commit details
    Browse the repository at this point in the history

Commits on Jun 25, 2021

  1. Initialize {sw,se,nw,ne}_corner to .false in model/fv_arrays.F90 

    (cherry picked from commit bf0630f)
    @DusanJovic-NOAA @bensonr
    DusanJovic-NOAA authored and bensonr committed Jun 25, 2021
    Configuration menu
    Copy the full SHA
    2f53d89 View commit details
    Browse the repository at this point in the history

Commits on Jul 8, 2021

  1. merge of latest dev work from GFDL Weather and Climate Dynamics Divis… 

    …ion (NOAA-GFDL#114)

* merge of latest dev work from GFDL Weather and Climate Dynamics Division

* remove trailing whitespace from source files

* release notes updates in RELEASE.md

* Remove blocks of debug code and commented code
    @bensonr
    bensonr authored Jul 8, 2021
    Configuration menu
    Copy the full SHA
    77e92f6 View commit details
    Browse the repository at this point in the history

  2. Update README.md

    @bensonr
    bensonr authored Jul 8, 2021
    Configuration menu
    Copy the full SHA
    cdd9d99 View commit details
    Browse the repository at this point in the history

Commits on Jul 13, 2021

  1. read ak/bk from user specified files (NOAA-GFDL#115) 

    * read ak/bk from user specified files

* add input.nml parameter fv_eta_file for user specified ak/bk; change ks calculation when npz_type=input; use newunit to replace fixed file unit for npz_type=input
(cherry picked from commit 3a0d35a)

Conflicts:
	model/fv_control.F90
	tools/fv_eta.F90
    @JiliDong-NOAA @bensonr
    JiliDong-NOAA authored and bensonr committed Jul 13, 2021
    Configuration menu
    Copy the full SHA
    4ba0e63 View commit details
    Browse the repository at this point in the history

  2. update correct release name in README.md

    @bensonr
    bensonr authored Jul 13, 2021
    Configuration menu
    Copy the full SHA
    ae14c6e View commit details
    Browse the repository at this point in the history

Commits on Jul 21, 2021

  1. FV3 Example Notebooks and cleanup of docs directory (NOAA-GFDL#117) 

    * Create examples README.md

* Reorganizing files in docs/ directory

* Added advection notebook

* Fixed subplot spacing

* New 3D case notebooks

* Added notebooks

* Update README.md
    @lharris4
    lharris4 authored Jul 21, 2021
    Configuration menu
    Copy the full SHA
    ef5028f View commit details
    Browse the repository at this point in the history

Commits on Aug 3, 2021

  1. removed module use of INPUT_STR_LENGTH in fv_control.F90 (NOAA-GFDL#122)

    @bensonr
    bensonr authored Aug 3, 2021
    Configuration menu
    Copy the full SHA
    3e70328 View commit details
    Browse the repository at this point in the history

Commits on Aug 4, 2021

  1. updates logic for file read of eta levels (NOAA-GFDL#124) 

    * add check on eta levels to ensure their monotonicity

* update Jili Dong's ak/bk external input to
  - use the FMS ascii_read (single read/broadcast)
  - error check input to ensure the proper number of levels present

* added a format description for the external eta file and ensured a correct the file length check for FMS 2021.03 and greater
    @bensonr
    bensonr authored Aug 4, 2021
    Configuration menu
    Copy the full SHA
    0b2491a View commit details
    Browse the repository at this point in the history

  2. merge of minor updates from GFDL Weather and Climate Dynamics Divisio… 

    …n (20210804) (NOAA-GFDL#127)

* output conversion error warning in debug mode w/ Intel
* incorrect argument to mpp_max in fv_restart.F90 affecting nesting
    @bensonr
    bensonr authored Aug 4, 2021
    Configuration menu
    Copy the full SHA
    bfe7847 View commit details
    Browse the repository at this point in the history

Commits on Aug 5, 2021

  1. Merge branch 'master' into master2emc for eventual merge with 'dev/emc'

    @bensonr
    bensonr committed Aug 5, 2021
    Configuration menu
    Copy the full SHA
    c7fb069 View commit details
    Browse the repository at this point in the history

Commits on Aug 6, 2021

  1. removed extra nrows_blend from merge

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    3f69c53 View commit details
    Browse the repository at this point in the history

  2. removed module use error

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    112feb9 View commit details
    Browse the repository at this point in the history

  3. remove double definition

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    d09aa09 View commit details
    Browse the repository at this point in the history

  4. add missing variable declaration

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    fc31bd8 View commit details
    Browse the repository at this point in the history

  5. fixed error message

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    97ff88f View commit details
    Browse the repository at this point in the history

  6. add missing endif

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    562eba3 View commit details
    Browse the repository at this point in the history

  7. remove unnecessary argument

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    2417bf1 View commit details
    Browse the repository at this point in the history

  8. remove unneeded argument

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    d440d46 View commit details
    Browse the repository at this point in the history

  9. remove unneeded argument

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    3934d6a View commit details
    Browse the repository at this point in the history

  10. remove calls to undefined reference

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    2fa1c51 View commit details
    Browse the repository at this point in the history

  11. remove obsoleted function

    @bensonr
    bensonr committed Aug 6, 2021
    Configuration menu
    Copy the full SHA
    2cfb121 View commit details
    Browse the repository at this point in the history

Commits on Aug 7, 2021

  1. final?? fixes to tools/external_ic.F90

    @bensonr
    bensonr committed Aug 7, 2021
    Configuration menu
    Copy the full SHA
    a6b2f07 View commit details
    Browse the repository at this point in the history

Commits on Aug 11, 2021

  1. revert changes to external_ic used to recover baselines

    @bensonr
    bensonr committed Aug 11, 2021
    Configuration menu
    Copy the full SHA
    5747ae9 View commit details
    Browse the repository at this point in the history

  2. revert changes in fv_regional_bc.F90 needed to reproduce baselines

    @bensonr
    bensonr committed Aug 11, 2021
    Configuration menu
    Copy the full SHA
    0f9f812 View commit details
    Browse the repository at this point in the history

  3. removed outdated documentation information

    @bensonr
    bensonr committed Aug 11, 2021
    Configuration menu
    Copy the full SHA
    c9d3b1e View commit details
    Browse the repository at this point in the history

  4. removed redundant doxygen as it is all in fv_arrays

    @bensonr
    bensonr committed Aug 11, 2021
    Configuration menu
    Copy the full SHA
    e1bb4af View commit details
    Browse the repository at this point in the history

  5. change plus to minus in external_ic.F90

    @bensonr
    bensonr committed Aug 11, 2021
    Configuration menu
    Copy the full SHA
    7b16d74 View commit details
    Browse the repository at this point in the history

  6. fix final typo in external_ic.F90

    @bensonr
    bensonr committed Aug 11, 2021
    Configuration menu
    Copy the full SHA
    ed0bcfc View commit details
    Browse the repository at this point in the history

Commits on Aug 12, 2021

  1. remove empty if-test for renormalization

    @bensonr
    bensonr committed Aug 12, 2021
    Configuration menu
    Copy the full SHA
    d59800b View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into master2emc

    @bensonr
    bensonr committed Aug 12, 2021
    Configuration menu
    Copy the full SHA
    88681bc View commit details
    Browse the repository at this point in the history

Commits on Aug 18, 2021

  1. Merge remote-tracking branch 'origin/dev/emc' into master2emc

    @bensonr
    bensonr committed Aug 18, 2021
    Configuration menu
    Copy the full SHA
    b9ef6a7 View commit details
    Browse the repository at this point in the history