Piper File List

Piper File List

Name	Description
Assertion Sub Pipe	Commands and parameters to create a default entity attributes processing sub-pipeline.
Attribute Cleartk Sub Pipe	Commands and parameters to create a default entity attributes processing sub-pipeline.
Chunker Sub Pipe	Commands and parameters to create a default chunker processing sub-pipeline.
Cnlpt Negation	This is an example piper file that will spin up a complete pbj pipeline.
Coref Sub Pipe	Commands and parameters to create a default coreference processing sub-pipeline.
Default Advanced Pipeline	Pipeline with degree-of and location-of relations, events, times, temporal relations, document creation time relations and coreferences.
Default Coref Pipeline	Pipeline with coreference resolution.
Default Fast Pipeline	Commands and parameters to create a plaintext document processing pipeline with UMLS entity lookup.
Default Relation Coref Pipeline	Pipeline with degree-of and location-of relations and coreference resolution.
Default Relation Pipeline	Clinical Pipeline with degree-of and location-of relations.
Default Relation Temporal Pipeline	Clinical Pipeline with degree-of, location-of, events, times, temporal and event-doc creation time relations.
Default Temporal Coref Pipeline	Pipeline with events, times, temporal relations, document creation time relations and coreferences.
Default Temporal Pipeline	Clinical Pipeline with events, times, event-event and event-time relations plus event-document creation time relations.
Default Tokenizer Pipeline	Commands and parameters for a small tokenization pipeline.
Dictionary Sub Pipe	Commands and parameters to create a dictionary lookup sub-pipeline.
Full Tokenizer Pipeline	Commands and parameters for a small tokenization pipeline with sections, paragraphs and lists.
Ne Contexts Sub Pipe	Partial pipeline to add assertion (e.g. negation, uncertainty) attributes based upon context.
Pbj Starter	This is a piper file that will perform initial steps required for running a ctakes-pbj pipeline.
Pbj Stopper	This is a piper file that will perform final steps required for stopping a ctakes-pbj pipeline.
Relation Sub Pipe	Commands and parameters to create a default relation extraction sub-pipeline.
Sectioned Advanced Pipeline	Clinical Pipeline with section, paragraph and list detection and degree-of and location-of relations
Sectioned Coref Pipeline	Clinical Pipeline with section, paragraph and list detection and coreference resolution
Sectioned Fast Pipeline	Clinical Pipeline with section, paragraph and list detection
Sectioned Relation Coref Pipeline	Clinical Pipeline with section, paragraph and list detection and degree-of and location-of relations
Sectioned Relation Pipeline	Clinical Pipeline with section, paragraph and list detection and degree-of and location-of relations
Sectioned Relation Temporal Pipeline	Clinical Pipeline with sections, paragraphs, lists, degree-of, location-of, events, times, temporal and event-doc creation time relations.
Sectioned Temporal Coref Pipeline	Clinical Pipeline with section, paragraph and list detection with
Sectioned Temporal Pipeline	Clinical Pipeline with sections, paragraphs, lists, events, times, temporal and event-doc creation time relations.
Temporal Sub Pipe	Commands and parameters to create a temporal processing sub-pipeline.
Ts Attribute Cleartk Sub Pipe	Commands and parameters to create a thread-safe default entity attributes processing sub-pipeline.
Ts Chunker Sub Pipe	Commands and parameters to create a thread-safe default chunker processing sub-pipeline.
Ts Coref Sub Pipe	Commands and parameters to create a thread-safe default coreference processing sub-pipeline.
Ts Default Advanced Pipeline	Thread-safe Pipeline with degree-of and location-of relations, events, times, temporal relations, document creation time relations and coreferences.
Ts Default Coref Pipeline	Thread-safe Pipeline with coreference resolution.
Ts Default Fast Pipeline	Commands and parameters to create a thread-safe plaintext document processing pipeline with UMLS lookup.
Ts Default Relation Coref Pipeline	Thread-safe Pipeline with degree-of and location-of relations and coreference resolution.
Ts Default Relation Pipeline	Thread Safe Default Clinical Pipeline with degree-of and location-of relations
Ts Default Relation Temporal Pipeline	Thread Safe Clinical Pipeline with degree-of and location-of relations, events, times, temporal abd event-doc creation time relations.
Ts Default Temporal Coref Pipeline	Thread-safe Pipeline with events, times, temporal relations, document creation time relations and coreferences.
Ts Default Temporal Pipeline	Thread Safe Default Clinical Pipeline with events, times, event-event and event-time relations plus event-document creation time relations
Ts Default Tokenizer Pipeline	Commands and parameters for a small thread-safe tokenization pipeline.
Ts Dictionary Sub Pipe	Commands and parameters to create a default dictionary lookup sub-pipeline.
Ts Full Tokenizer Pipeline	Commands and parameters for a small thread-safe tokenization pipeline with sections, paragraphs and lists.
Ts Relation Sub Pipe	Commands and parameters to create a relation extraction sub-pipeline.
Ts Sectioned Advanced Pipeline	Thread Safe Clinical Pipeline with section, paragraph and list detection and degree-of and location-of relations
Ts Sectioned Coref Pipeline	Thread-safe Pipeline with section, paragraph and list detection and coreference resolution.
Ts Sectioned Fast Pipeline	Thread Safe Clinical Pipeline with section, paragraph and list detection
Ts Sectioned Relation Coref Pipeline	Thread-safe Pipeline with section, paragraph and list detection, degree-of and location-of relations and coreferences.
Ts Sectioned Relation Pipeline	Thread Safe Clinical Pipeline with section, paragraph and list detection and degree-of and location-of relations.
Ts Sectioned Relation Temporal Pipeline	Thread safe Clinical Pipeline with sections, paragraphs, lists, degree-of, location-of, events, times, temporal and event-doc creation time relations.
Ts Sectioned Temporal Coref Pipeline	Thread-safe Pipeline with section, paragraph and list detection, events, times, temporal relations and document creation time relations.
Ts Sectioned Temporal Pipeline	Thread safe Clinical Pipeline with sections, paragraphs, lists, events, times, temporal and event-doc creation time relations.
Ts Temporal Sub Pipe	Commands and parameters to create a thread safe temporal processing sub-pipeline.
Windowed Attribute Cleartk Sub Pipe	Commands and parameters to create a default entity attributes processing sub-pipeline for large files. This is not a full pipeline.