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Differences between 4.0 and 5.0
There are many major and minor changes between cTAKES 4.0.0 and cTAKES 5.0.0
New Tools:
New Modules:
ctakes-fhir - Read and write primitive Fast Healthcare Interchange Resource (FHIR) files (v3).
ctakes-models - Machine Learning -built models used by cTAKES. Refactored from older -resources modules.
ctakes-dockhand - The Standard Pipeline Installation Facility.
ctakes-tiny-rest - Small REST service, similar to but simpler than ctakes-web-rest.
ctakes-user-resources - Container for user-editable resources for maven projects using cTAKES as a dependency.
ctakes-web-rest - General REST service for cTAKES pipelines.
Removed Modules:
All -res modules have been removed.
Files that are meant to be edited by the user have been moved to the ctakes-user-resources for binary builds, or
applicable ctakes-{module}/src/user/resources/ locations within the source code.
e.g. ctakes-core/src/user/resources/
ctakes-dict-lookup has been deprecated
New Collection Readers:
New Annotation Engines:
New output Writers:
New API interfaces:
- Piper File Submitter
- UMLS Package Fetcher
- Dictionary Creator
- Simple Pipeline Fabricator
- Pipeline Installation Facility
- ctakes-pbj module
- Getting started with PBJ
- Python pbj-component
- Python pbj-pipeline
- Python pbj-scripts
- Python pbj-tools
- pbj-user-pipeline
- examples
- ctakes-assertion
- ctakes-assertion-zoner
- ctakes-chunker
- ctakes-clinical-pipeline
- ctakes-constituency-parser
- ctakes-context-tokenizer
- ctakes-core
- ctakes-coreference
- ctakes-dependency-parser
- ctakes-dictionary-lookup
- ctakes-dictionary-lookup-fast
- ctakes-distribution
- ctakes-dockhand
- ctakes-drug-ner
- ctakes-examples
- ctakes-fhir
- ctakes-gui
- ctakes-lvg
- ctakes-mastif-zoner
- ctakes-ne-contexts
- ctakes-pbj
- ctakes-pos-tagger
- ctakes-preprocessor
- ctakes-regression-test
- ctakes-relation-extractor
- ctakes-side-effect
- ctakes-smoking-status
- ctakes-template-filler
- ctakes-temporal
- ctakes-tiny-rest
- ctakes-type-system
- ctakes-utils
- ctakes-web-rest
- ctakes-ytex
- ctakes-ytex-uima
- ctakes-ytex-web