ctakes drug ner

Can identify attributes of drug mentions such as Dosage, Frequency, Frequency Unit, Route and Strength from either plaintext or CDA documents. It also provides the ability to specify which sections of a note contain drugs in a list format versus drug mentions within the narrative of the note. This allows for customized processing done on different sections and generally improves the quality of the annotations.

Annotation Engines
Output Writers
Utilities

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Annotation Engines

Drug Mention Annotator

Creates modifier annotations needed to handle the drug mentions.

Source class: DrugMentionAnnotator
Source package: org.apache.ctakes.drugner.ae
Parent class: org.apache.uima.analysis_component.JCasAnnotator_ImplBase
Dependencies: Section, Base Token
Products: Identified Annotation

No available configuration parameters.

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Output Writers

Database File Writer

Writes to a file that is compatible with Database import.

Source class: ConsumeNamedEntityRecordModel
Source package: org.apache.ctakes.drugner.cc
Parent class: org.apache.uima.collection.CasConsumer_ImplBase
Dependencies: Section, Identified Annotation

No available configuration parameters.

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Utilities

Drug Copier

Copies data from an existing JCas into a new JCas.

Source class: CopyDrugAnnotator
Source package: org.apache.ctakes.drugner.ae
Parent class: org.apache.uima.analysis_component.JCasAnnotator_ImplBase
Dependencies: Section

No available configuration parameters.