clinical pipeline desc
The Default Clinical Pipeline is a great place for the new user of a binary installation to start. New developers should look at the ctakes-examples project to start.
The Default Clinical Pipeline produces the most commonly desired output from cTAKES. This includes annotations for Anatomical sites, Signs/Symptoms, Procedures, Diseases/Disorders and Medications. For each annotation there are normalized UMLS CUIs, plus values for negation, uncertainty and subject.
- Piper File Submitter
- UMLS Package Fetcher
- Dictionary Creator
- Simple Pipeline Fabricator
- Pipeline Installation Facility
- ctakes-pbj module
- Getting started with PBJ
- Python pbj-component
- Python pbj-pipeline
- Python pbj-scripts
- Python pbj-tools
- pbj-user-pipeline
- examples
- ctakes-assertion
- ctakes-assertion-zoner
- ctakes-chunker
- ctakes-clinical-pipeline
- ctakes-constituency-parser
- ctakes-context-tokenizer
- ctakes-core
- ctakes-coreference
- ctakes-dependency-parser
- ctakes-dictionary-lookup
- ctakes-dictionary-lookup-fast
- ctakes-distribution
- ctakes-dockhand
- ctakes-drug-ner
- ctakes-examples
- ctakes-fhir
- ctakes-gui
- ctakes-lvg
- ctakes-mastif-zoner
- ctakes-ne-contexts
- ctakes-pbj
- ctakes-pos-tagger
- ctakes-preprocessor
- ctakes-regression-test
- ctakes-relation-extractor
- ctakes-side-effect
- ctakes-smoking-status
- ctakes-template-filler
- ctakes-temporal
- ctakes-tiny-rest
- ctakes-type-system
- ctakes-utils
- ctakes-web-rest
- ctakes-ytex
- ctakes-ytex-uima
- ctakes-ytex-web