January 22, 2019, Tuesday

• Processing Rampage data
  • QC and alignment of each replicate
  • Calling peaks with MACS2 using corresponding RNAseq data as control
  • Combine replicates
  • Operations
    • Use MCRNA app, add filtering (PCR duplicates, unique), skip RSEM and StringTie
    • Filter RNAseq data
    • Call peaks
    • Combine peaks
  • API
    • Add steps to a workflow
    • Remove steps from a workflow
• Processing Chipseq data
  • QC and alignment of each replicate and its control
  • Calling peaks with MACS2 or HOMER
  • Combine peaks
• Metadata
  • BrAPI