August 14, 2018, Tuesday

• Updates on the View button
  • Should check whether the file is there if clicked
  • A circling image should be shown while checking
• Handling annotation output
  • We have to compress the folder or remove the visualization output
  • How do we uncompress?
    • Can't do it directly with the current implementation
      • Check staging in https://github.com/warelab/sciapps/blob/maizecode/agavedancer/public/javascripts/stores/jobsStore.js
    • Use a job? It will be slow compared with directly copying
      • Plan to implement this
      • Make the same name folder on sciapps.org system
      • Check the folder, if exist, go to visualization
      • Need a way to prevent user submitting multiple jobs
      • For GWAS, we will compress manhattan.plot as manhattan.plot.tgz (done with EMMAX-0.0.4, MLM-0.0.4)
      • For MAKER, we will compress jbrowse_out and jbrowse_out.view as jbrowse_out.view.tgz (done, MAKER-2.32)
        • For Prokka-0.1.12, we will compress prokka_out and prokka_out.view as jbrowse_out.view.tgz (done, Prokka-0.0.1)
      • The app will take one input and uncompress it (done)
      • SciApps will handle generating the new URL and apache will redirect it
    • Use a PHP script to uncompress the file then redirect the URL?
      • https://stackoverflow.com/questions/11265914/how-can-i-extract-or-uncompress-gzip-file-using-php
    • Use a different site (like de.sciapps.org) to perform the visualization? Then we need to host a different site or build a different function?