April 14, 2017, Friday

• Optimization
  • Need to support direct link, which will resolve the tutorial link above!
    • Ask to set it up on brie for dev1
  • Can we select the file (box) when click on the filename? I know, for folders, we want to open it
  • Database rebuilt after updates
    • Need instructions to dump and reload old contents (if possible, depends on specific schema modifications)
  • Add a refresh button for file browsing
  • Job history management
    • Select/check all jobs (for building a workflow to save)
  • Load workflow
    • Need to clear out current history panel to make sure steps are consistent between workflow forms and job histories
    • Should warn user that history panel will be cleared out and give them option to save it before loading
  • CSS modifications
• TACC Workflow
  • Use RNA-seq workflow as an example
  • All apps run at TACC Stampede
  • For job and workflow, outputs will be saved to sci_data
    • Need to work with Tony to make sure sci_data is automatically linked to TACC's resource server
    • If not, set up a storage system (data.cyverse-cshl.org) at TACC (similar with data.sciapps.org)
• SciApps Web API
  • Code is already in place
  • Just need documentation and systematic design
  • Might need to add new API end points depending on community inputs
    • Take the JBrowse-Galaxy use case to see whether we need to add new end points
• Not discussed
  • Remove credentials from repo
  • Update queryGramene, Maker
  • Support job history checking for debugging
  • Direct link no longer working for local version
  • Browse Data Store will default to public (to user if log in? and change user to home?)