February 12, 2019, Tuesday

• EMS workflow
  • New SNPEff creates a different format
    • Old format can be generated with -formatEff -classic
  • We are getting 10 genes at the end instead of 2 genes
    • Could be that the new version of bcftools is calling more SNPs
    • Need to compare each step, the issue is chromosome name are coded differently in yinping's results
• SciApps visualization
  • Popup is blocked, is it possible to change it?
• MaizeCODE chipseq workflow
  • Missing local app jsons, which can be easily fixed or after logging in
  • Results of visualization is not correct, need to narrow down the problem