Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
-
Updated
Aug 8, 2024 - Python
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Making whole bacterial genome sequencing data analysis easy
HydrAMP: a deep generative model for antimicrobial peptide discovery
Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"
An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
AMR/VF LGT focused bacterial genomics analysis workflow
Harmonization of AMR predictor tool outputs
A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi
Chromosomal mutations associated with nitrofurantoin resistance in Escherichia coli
Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
A Jupyter notebook to demonstrate usage of piezo, gumpy and gnomonicus with different AMR catalogues
👨💻🧬🤖 deep neural networks: 1Dconvolution experiments with kernel size and stride length
MTB++ a software developed to predict antimicrobial resistance to 13 antibiotics and 3 families of antimicrobials.
Antimicrobial Resistance Test Interpretation Engine
Add a description, image, and links to the antimicrobial-resistance topic page so that developers can more easily learn about it.
To associate your repository with the antimicrobial-resistance topic, visit your repo's landing page and select "manage topics."