Public Health Alliance for Genomic Epidemiology
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hAMRonization
hAMRonization PublicParse multiple Antimicrobial Resistance Analysis Reports into a common data structure
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pipeline-resources
pipeline-resources PublicBioinformatics Pipeline and Visualization resources
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SARS-CoV-2-Contextual-Data-Specification
SARS-CoV-2-Contextual-Data-Specification PublicCollection template and associated materials for SARS-CoV-2 metadata
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hAMRonization_workflow
hAMRonization_workflow PublicHarmonization of AMR predictor tool outputs
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Repositories
- primaschema Public Forked from bede/primaschema
Infrastructure for tiled amplicon PCR primer scheme definitions
pha4ge/primaschema’s past year of commit activity - Wastewater_Contextual_Data_Specification Public Forked from cidgoh/Wastewater_Contextual_Data_Specification
A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.
pha4ge/Wastewater_Contextual_Data_Specification’s past year of commit activity - hAMRonization Public
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
pha4ge/hAMRonization’s past year of commit activity - SARS-CoV-2-Contextual-Data-Specification Public
Collection template and associated materials for SARS-CoV-2 metadata
pha4ge/SARS-CoV-2-Contextual-Data-Specification’s past year of commit activity - contextual_data_QC_tags Public
Standardized attributes for labelling sequence datasets with known quality control issues
pha4ge/contextual_data_QC_tags’s past year of commit activity
