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@phac-nml

National Microbiology Laboratory

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  1. mob-suite mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 115 31

  2. staramr staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 115 26

  3. ecoli_serotyping ecoli_serotyping Public

    In silico prediction of E. coli serotype

    Python 47 10

  4. irida irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  5. refseq_masher refseq_masher Public

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 39 3

  6. biohansel biohansel Public

    Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

    Python 25 7

Repositories

Showing 10 of 137 repositories
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 8 Apache-2.0 2 12 6 Updated Aug 19, 2024
  • mikrokondo Public

    A simple pipeline for bacterial assembly and quality control

    phac-nml/mikrokondo’s past year of commit activity
    Nextflow 10 MIT 2 12 3 Updated Aug 19, 2024
  • inext_cli Public

    IRIDA Next GraphQL Commandline toolkit

    phac-nml/inext_cli’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 19, 2024
  • phac-nml/gasclustering’s past year of commit activity
    Nextflow 0 MIT 0 1 1 Updated Aug 19, 2024
  • arboratornf Public

    EPS suite Arborator pipeline

    phac-nml/arboratornf’s past year of commit activity
    HTML 0 MIT 0 1 1 Updated Aug 19, 2024
  • iridanextexample Public

    An example pipeline for running on IRIDA Next

    phac-nml/iridanextexample’s past year of commit activity
    Nextflow 0 MIT 3 2 0 Updated Aug 19, 2024
  • snvphylnfc Public

    SNVPhyl nf-core Pipeline (Development)

    phac-nml/snvphylnfc’s past year of commit activity
    Nextflow 3 MIT 1 4 1 Updated Aug 19, 2024
  • gasnomenclature Public

    Nomenclature assignment pipeline

    phac-nml/gasnomenclature’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 19, 2024
  • go-cluster Public

    A utility for fast-matching and clustering.

    phac-nml/go-cluster’s past year of commit activity
    Go 1 0 0 0 Updated Aug 16, 2024
  • phac-nml/nf-pipelines’s past year of commit activity
    0 CC-BY-4.0 0 4 0 Updated Aug 14, 2024