Centre for Infectious Disease and One Health
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DataHarmonizer
DataHarmonizer PublicA standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by …
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GRDI_AMR_One_Health
GRDI_AMR_One_Health PublicA data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsh…
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pathogen-genomics-package
pathogen-genomics-package PublicThis is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
Repositories
- DataHarmonizer Public
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…
cidgoh/DataHarmonizer’s past year of commit activity - MPox_Contextual_Data_Specification Public
A data specification for harmonizing MPox pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a the DataHarmonizer, supported by field and reference guides as well as different curation and new term request SOPs.
cidgoh/MPox_Contextual_Data_Specification’s past year of commit activity - GRDI_AMR_One_Health Public
A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
cidgoh/GRDI_AMR_One_Health’s past year of commit activity - nf-ncov-voc Public
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
cidgoh/nf-ncov-voc’s past year of commit activity - pathogen-genomics-package Public
This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates
cidgoh/pathogen-genomics-package’s past year of commit activity - AMBR_Contextual_data_Specification Public
A data specification for harmonizing pathogen genomics contextual data as part ofthe AMBR project. The specification provides standardized (ontology-based) fields and terms which are implemented via a the DataHarmonizer, supported by field and reference guides as well as different curation and new term request SOPs.
cidgoh/AMBR_Contextual_data_Specification’s past year of commit activity - CanCOGeN_Contextual_Data_Specification Public
A data specification for harmonizing One Health Canadian COVID pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a the DataHarmonizer, supported by field and reference guides as well as different curation and new term request SOPs.
cidgoh/CanCOGeN_Contextual_Data_Specification’s past year of commit activity - pathogen-mutation-functionalannotation-package Public
Package for functional annotation of mutations
cidgoh/pathogen-mutation-functionalannotation-package’s past year of commit activity - VIRUS-MVP Public
VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and globally.
cidgoh/VIRUS-MVP’s past year of commit activity