Releases: cytomining/CytoTable
Releases · cytomining/CytoTable
v0.0.10
v0.0.9
Changes
- Bump zipp from 3.18.1 to 3.19.1 (@dependabot via #216)
- Bump certifi from 2024.2.2 to 2024.7.4 (@dependabot via #215)
- Bump requests from 2.31.0 to 2.32.2 (@dependabot via #213)
- Use real AWS S3 data tests and apply related fixes (@d33bs via #212)
- Bump urllib3 from 1.26.18 to 1.26.19 (@dependabot via #210)
v0.0.8
Changes
- Increase sorting scalability via CytoTable metadata columns (@d33bs via #204)
- Bump flask-cors from 4.0.0 to 4.0.1 (@dependabot via #207)
- Bump werkzeug from 3.0.1 to 3.0.3 (@dependabot via #205)
- Bump jinja2 from 3.1.3 to 3.1.4 (@dependabot via #206)
- Enable Parsl app concurrency with futures (@d33bs via #194)
- Remove
SECURITY.md
to rely on organization-wide community health file (@d33bs via #184) - Use declarative version specification for Ubuntu GitHub Actions runners (@d33bs via #199)
- Avoid
macos-latest
Python version compatibility issues in GitHub Actions runner images (@d33bs via #196)
v0.0.7
Changes
- Use compartment tables as basis of preset joins (@d33bs via #183)
- Add order to limit and offset queries for deterministic results (@d33bs via #182)
- Bump idna from 3.6 to 3.7 (@dependabot via #186)
- Enable Python 3.12 compatibility through dependency-based updates (@d33bs via #174)
- Bump scipy from 1.9.3 to 1.10.0 (@dependabot via #173)
- Add python 3.11 to automated tests (@d33bs via #172)
- Remove poetry lockfile to better project testing with scheduled trigger (@d33bs via #170)
- Changing python's upper limit version to python<3.12 (@axiomcura via #158)
v0.0.6
v0.0.5
Changes
- Set upper limit on DuckDB version (
<0.10.0
) to avoid Arrow errors (@d33bs via #166) - Add weekly testing for preventative awareness of external changes (@d33bs via #167)
- Bump cryptography from 42.0.2 to 42.0.4 (@dependabot via #162)
- Bump cryptography from 41.0.6 to 42.0.2 (@dependabot via #161)
- Add
pytest
warning filters forpkg_resource
andsqlalchemy
(@d33bs, @kenibrewer via #153) - Fix source filename ingest for IN Carta data with spaces and inconsistent casing (@d33bs via #151)
- Add security community health file (@d33bs via #147)
v0.0.4
Changes
- Add IN Carta preset and related compatibility changes + testing (@d33bs via #145)
- Move from dev-dependencies to poetry group specification (@d33bs via #146)
- Define and demonstrate data transform types within documentation (@d33bs via #142)
- Bump jinja2 from 3.1.2 to 3.1.3 (@dependabot via #144)
- Add IN Carta test data from Colas Lab (@d33bs via #141)
- Increase documentation on cloud-based data sources (@d33bs via #138)
- Move PR template credit to un-rendered HTML comment (@d33bs via #139)
- Add project title definition (@d33bs via #135)
- Add version metadata to CytoTable Parquet output (@d33bs via #134)
- Add poetry dynamic versioning and update release process (@d33bs via #132)
- Bump paramiko from 3.1.0 to 3.4.0 (@dependabot via #133)
- Bump cryptography from 41.0.4 to 41.0.6 (@dependabot via #131)
- Bump werkzeug from 2.2.3 to 3.0.1 (@dependabot via #127)
- Bump flask from 2.2.3 to 2.2.5 (@dependabot via #130)
- Bump requests from 2.28.2 to 2.31.0 (@dependabot via #129)
- Bump cryptography from 40.0.1 to 41.0.4 (@dependabot via #128)
- Bump certifi from 2022.12.7 to 2023.7.22 (@dependabot via #126)
- Bump urllib3 from 1.26.15 to 1.26.18 (@dependabot via #125)
- Bump pygments from 2.14.0 to 2.15.0 (@dependabot via #124)
- Bump PyArrow dependency for CVE-2023-47248 (@d33bs via #123)
v0.0.3
Changes
- Patch v0.0.3 (@d33bs via #121)
- Add related software + paper references to citations (@d33bs via #120)
- Update readme with additional installation notes (@d33bs via #119)
- Move to offset-based joins (@d33bs via #113)
- Add PR author mentions to release drafts (@d33bs via #118)
- Fix PyPI readme image reference (@d33bs via #117)
- Use Parsl NoDataFlowKernelError for detecting existing Parsl configurations (@d33bs via #112)
- Enable DuckDB >= v0.8.0 (@d33bs via #114)
v0.0.2
Changes
- Update to v0.0.2 with related automated workflows (#108)
- Correct SQL preset join references (#106)
- Move to Parsl HighThroughputExecutor for default workflow execution (#97)
- Add exception on existing
dest_path
to avoid unsafe operation (#104) - Fix GitHub Actions version specification typo (#103)
- Update dependencies (#101)
- Remove dead code for Dagger-based testing (#99)
- Update test for
pandas
2.0.3 compatibility (#98) - Close database connections (#95)
- Reuse existing Parsl configurations (#93)
- Update DuckDB to
^v0.8.0
(#92) - Add PyArrow memory mapping improvements and allocator documentation (#91)
- Expand source and destination paths (#89)
- Move to PyArrow parquet writer for data extraction (#87)
- Adding Legacy Presets for CytoTable (#46)
- Add SQLite affinity type synonym matching for _sqlite_mixed_type_query_to_parquet (#84)
- Resolve test_convert_s3_path_sqlite test failures with explicit local_cache_dir (#83)
- Add SQLite mixed-type compatibility for _get_table_columns_and_types (#82)
- Add macos testing (#80)
- Change drop_nulls default in
convert()
to false (#78) - Fix test_convert_s3_path_sqlite test failure inconsistencies (#79)
- Add output data type casting controls for integers and floats (#49)
- Add SQLite mixed-type data handling capabilities (#50)
- Add logo png (#73)
- Fix link in README (#72)
- logo (#71)
- Enable preset overrides (#65)