A cookiecutter template for Snakemake workflows
-
Updated
Feb 2, 2022 - Python
A cookiecutter template for Snakemake workflows
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
StaG Metagenomic Workflow Collaboration
A workflow for creating small NGS test data sets, useful for continuous integration.
MetScale: snakemake workflows to scale metagenome analyses
🐍 Snakemake wrappers for bioinformatics.
Pipeline for lncRNA, Circular RNA, and novel mRNA identification.
Pipeline for analysis of Dropseq single cell data
Imputation workflow for low coverage whole genome sequencing data
Scaling studies on high-performance clusters using Snakemake workflows
Snakemake workflow to run transdecoder + trinotate
Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization
The snakemake workflow for whole-exome sequencing analysis and generating vcf files
Collective Snakemake workflows for easy and reproducible NGS data analysis.
Melange - Snakemake workflow for genome annotation
🐍🔧 Snakemake wrappers for GATK.
Multisample DNAseq variant calling pipeline for use in diagnostics
quantify-virome: identify and quantify viruses from metagenomic shotgun sequences
snakemake workflow for random forest based feature selection on chromHMM data
imputation workflow for array data using shapeit2 and impute2
Add a description, image, and links to the snakemake-workflows topic page so that developers can more easily learn about it.
To associate your repository with the snakemake-workflows topic, visit your repo's landing page and select "manage topics."