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@ctmrbio

CTMR

Centre for Translational Microbiome Research

Pinned

  1. stag-mwc stag-mwc Public

    StaG Metagenomic Workflow Collaboration

    Python 26 13

  2. BACTpipe BACTpipe Public

    BACTpipe: An assembly and annotation pipeline for bacterial genomics

    Groovy 20 7

  3. optivag optivag Public

    Database for annotating vaginal communities

    Python 1 2

  4. bioinformatics_curriculum bioinformatics_curriculum Public

    Some ideas on things to learn to get started with bioinformatics

    17 7

  5. sm3 sm3 Public

    Simple Snakemake example

    Python 1

  6. run_in_parallel run_in_parallel Public

    Run simple commands in parallel on Slurm

    Python

Repositories

Showing 10 of 30 repositories
  • stag-mwc Public

    StaG Metagenomic Workflow Collaboration

    ctmrbio/stag-mwc’s past year of commit activity
    Python 26 MIT 13 4 (1 issue needs help) 1 Updated Aug 20, 2024
  • rstudio_singularity Public

    Run Rstudio with Singularity

    ctmrbio/rstudio_singularity’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated May 6, 2024
  • ENA_submission_notebooks Public

    Notebooks in Jupyter that can be used for filling out meta data checklists required for uploading data to the ENA

    ctmrbio/ENA_submission_notebooks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 12, 2024
  • 194_BOuru_shotgun_analysis Public
    ctmrbio/194_BOuru_shotgun_analysis’s past year of commit activity
    0 0 0 0 Updated Nov 30, 2023
  • slurm-jobstats Public

    Compute job statistics for Slurm jobs

    ctmrbio/slurm-jobstats’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Nov 7, 2023
  • sm3 Public

    Simple Snakemake example

    ctmrbio/sm3’s past year of commit activity
    Python 1 MIT 0 0 0 Updated May 2, 2023
  • ctmr-superset Public

    Custom Docker image for Apache Superset

    ctmrbio/ctmr-superset’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Apr 25, 2023
  • valody Public

    A tool to assign VAginaL DYnamic categories to individuals based on their Valencia CST assignments

    ctmrbio/valody’s past year of commit activity
    Python 2 MIT 1 0 0 Updated Apr 24, 2023
  • gitdemo Public
    ctmrbio/gitdemo’s past year of commit activity
    0 0 0 0 Updated Apr 20, 2023
  • crc-survival Public

    Code for Tumor Microbiome is associated with survival in late stage colorectal cancer

    ctmrbio/crc-survival’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Mar 2, 2023
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