🦠 A comprehensive R package for deep mining microbiome
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Updated
Jul 24, 2024 - R
🦠 A comprehensive R package for deep mining microbiome
Network construction, analysis, and comparison for microbial compositional data
This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
A Bayesian model for the differential abundance analysis of microbiome sequencing data
Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
A Shiny interface for the MicrobiomeStat R package, designed to facilitate analysis and visualization of microbiome data.
Analyzing microbiome data from Gigante, Barro Colorado, Panama. Part of an Undergraduate Thesis (defended on May 13th, 2022).
This is the data and R code associated with our paper "A t-SNE Based Classification Approach to Compositional Microbiome Data"
A project to evaluate the differences in bacterial association networks from rainforest and converted pasturelands in the Colombian Amazon region using CCLasso and SPRING inference methods
This repository contains R scripts for data analyses and visualization.
short-read amplicon data visualization suite
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