fungi
Here are 88 public repositories matching this topic...
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
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Nov 18, 2023 - Python
UFCG: Universal Fungal Core Genes
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Jul 9, 2024 - Java
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
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Mar 18, 2024 - Perl
creating hybrid-gene phylogenetic trees for diversity analyses
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Aug 23, 2022 - Python
Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
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Jun 7, 2022 - Python
A spatially explicit trait- and individual-based microbial systems modelling framework
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Aug 16, 2024 - Python
Domingo Fermenter software source code
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Jul 25, 2024 - Python
🐟Catalogue of Life toolkit for R
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Nov 29, 2023 - R
An R-shiny package to analyse and visualise fungal gene expression data
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Mar 14, 2024 - R
A structured controlled vocabulary for the anatomy of fungi
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Oct 26, 2022 - Makefile
Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣
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Apr 28, 2023 - R
Interactive 3D fungi models built with Three.js
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Dec 9, 2022 - JavaScript
Assembly and phylogentic analysis pipeline for draft genome of a Pestalotiopsis fungi.
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Mar 31, 2022 - Python
Fungal Identification Pipeline
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Aug 7, 2024 - Python
GenBank Record downloader for taxonomists
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May 21, 2024 - Python
Preprocessing and differential expression analysis for QuantSeq 3' mRNA-seq data
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May 9, 2023 - Shell
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
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Jun 7, 2022 - Python
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
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Jan 16, 2023 - Python
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