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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 990 252

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 823 173

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 215 74

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 174 37

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    33 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 91 repositories
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 12 4 0 0 Updated Aug 20, 2024
  • yulab.utils Public

    Miscellaneous functions commonly used by 'YuLab-SMU'.

    YuLab-SMU/yulab.utils’s past year of commit activity
    R 30 10 0 0 Updated Aug 20, 2024
  • YuLab-SMU/wikiprofiler’s past year of commit activity
    R 5 4 0 0 Updated Aug 20, 2024
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot’s past year of commit activity
    R 225 65 117 0 Updated Aug 19, 2024
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 990 252 310 1 Updated Aug 19, 2024
  • gson Public
    YuLab-SMU/gson’s past year of commit activity
    R 2 3 0 0 Updated Aug 19, 2024
  • wget Public

    download files in R using wget -c

    YuLab-SMU/wget’s past year of commit activity
    R 16 3 0 0 Updated Aug 18, 2024
  • YuLab-SMU/yulabcheck’s past year of commit activity
    R 0 0 0 0 Updated Aug 17, 2024
  • treeio Public

    🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

    YuLab-SMU/treeio’s past year of commit activity
    R 94 24 24 1 Updated Aug 17, 2024
  • ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    YuLab-SMU/ggtree’s past year of commit activity
    R 823 173 156 0 Updated Aug 17, 2024

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