Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
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Updated
Aug 18, 2024 - Python
Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
Interactive CNV App for Viewing CNV stuff
CNV DB Adapter
A Snakemake pipeline for copy number variant calling without normal tissue samples
Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
Annotation and Ranking of Structural Variation
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
In this repository I backup the pipelines I write for the project I am involved
Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
A repo that contains miscellaneous Python/C++ modules/programs, a standalone Python module 'palos' by the yfish group (can be installed by pip).
Workflow for Sequenza, cellularity and ploidy
Calls Copy Number Variants on sequencing data from cancer patients
freec workflow - call CNV on your tumor wih optional normal
Web frontend for the bycon implementation of the Beacon v2 API
CNV detection for prokaryote genomes using NGS sequencing data
Copy number variant caller and depth visualization utility for PacBio HiFi reads
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