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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

Pinned

  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 3

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 8 3

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 228 repositories
  • provenanceReporter Public
    oicr-gsi/provenanceReporter’s past year of commit activity
    Python 0 0 0 0 Updated Aug 20, 2024
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 8 GPL-3.0 3 2 3 Updated Aug 20, 2024
  • variantEffectPredictor Public

    Variant Effect Predictor Workflow

    oicr-gsi/variantEffectPredictor’s past year of commit activity
    WDL 3 1 1 1 Updated Aug 20, 2024
  • pinery Public

    A LIMS abstraction layer to provide generalized LIMS access via a web service.

    oicr-gsi/pinery’s past year of commit activity
    Java 1 GPL-3.0 0 0 2 Updated Aug 19, 2024
  • Nextflow_WG_pipeline Public
    oicr-gsi/Nextflow_WG_pipeline’s past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 16, 2024
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 GPL-3.0 0 0 0 Updated Aug 15, 2024
  • cBioPortal_Importer Public

    Scripts to facilitate loading data into cBioPortal

    oicr-gsi/cBioPortal_Importer’s past year of commit activity
    Python 0 0 0 1 Updated Aug 7, 2024
  • cardea Public

    Case data API

    oicr-gsi/cardea’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Aug 6, 2024
  • purple Public
    oicr-gsi/purple’s past year of commit activity
    WDL 0 0 0 0 Updated Aug 6, 2024
  • mrdetect Public

    workflow to detect Minimal Residual disease with MRDetect

    oicr-gsi/mrdetect’s past year of commit activity
    WDL 0 0 1 1 Updated Aug 2, 2024
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