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@nf-cmgg

Center For Medical Genetics Ghent - Nextflow workflows

Center For Medical Genetics Ghent - Ghent University Hospital - Nextflow workflows

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  1. structural structural Public

    A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

    Nextflow 14 3

  2. germline germline Public

    A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

    Nextflow 6 1

  3. preprocessing preprocessing Public

    Preprocessing workflow for sequencing data at CMGG

    Nextflow 2 2

Repositories

Showing 10 of 10 repositories
  • preprocessing Public

    Preprocessing workflow for sequencing data at CMGG

    nf-cmgg/preprocessing’s past year of commit activity
    Nextflow 2 MIT 2 2 0 Updated Aug 19, 2024
  • configs Public

    Nextflow config files

    nf-cmgg/configs’s past year of commit activity
    0 MIT 1 0 0 Updated Aug 19, 2024
  • germline Public

    A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

    nf-cmgg/germline’s past year of commit activity
    Nextflow 6 MIT 1 10 1 Updated Aug 9, 2024
  • structural Public

    A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

    nf-cmgg/structural’s past year of commit activity
    Nextflow 14 MIT 3 18 0 Updated Jul 31, 2024
  • exomecnv Public

    A nextflow pipeline for calling exome CNVs

    nf-cmgg/exomecnv’s past year of commit activity
    Nextflow 8 MIT 2 0 1 Updated Jul 10, 2024
  • test-datasets Public

    Test datasets for unit tests with the nf-cmgg pipelines

    nf-cmgg/test-datasets’s past year of commit activity
    0 MIT 1 0 0 Updated May 30, 2024
  • wisecondorx Public

    A nextflow pipeline for creating references for WisecondorX

    nf-cmgg/wisecondorx’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Apr 24, 2024
  • sampletracking Public

    CMGG Sampletracking workflow

    nf-cmgg/sampletracking’s past year of commit activity
    Nextflow 0 MIT 0 2 0 Updated Mar 26, 2024
  • nextflow-beginner-feb-2024 Public

    The repository used at the Beginner Nextflow course in february 2024

    nf-cmgg/nextflow-beginner-feb-2024’s past year of commit activity
    Nextflow 5 MIT 1 0 0 Updated Feb 7, 2024
  • qdnaseq Public

    A Nextflow pipeline to create qDNAseq bin annotations

    nf-cmgg/qdnaseq’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Sep 7, 2023

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