Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing
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Updated
Jun 19, 2024 - Python
Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Python package for microsatellite genotyping from highly multiplexed amplicon sequencing data
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
gNOMO2 allows integrated multi-omics analyses of microbiomes
A snakemake pipeline for amplicon (16S, 18S, ITS) sequence analysis using Usearch.
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
CRISPRSeqSim is a tool that simulates results of CRISPR/cas editing fragments target sequencing.
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