Tools for visualising microbial community amplicon data
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Updated
May 21, 2024 - R
Tools for visualising microbial community amplicon data
Various functions for analysis of microbial community data
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Metagenomics calibration R package
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
Interactive application to explore various ecological diversity metrics
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
Analysis for McLaren, Willis, and Callahan (2019)
๐ 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
Metabarcoding pipeline
Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen anรกlisis con asv de bacterias y de hongos (estos รบltimos poco explicados por Schloss en su SOP).
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
Tesis licenciatura "Metataxonรณmica de bacterias comoindicador de la descarga de xenobiรณticos por el Anillo de Cenotes en el sedimento de manglar rojo"
Statistical and Computational methods for Microbiome Studies.
Primer scripts to produce meaningful visualisations from pre-processed metabarcoding data
๐๐๐ซ๐๐๐ is an R package designed for the ๐ฆ๐น๐ต๐ณ๐ข๐ค๐ต๐ช๐ฐ๐ฏ of barcode sequences. It efficiently ๐ค๐ญ๐ถ๐ด๐ต๐ฆ๐ณ๐ด these sequences and provides functionality for the calculation and visualization of ๐ต๐ช๐ฎ๐ฆ ๐ด๐ฆ๐ณ๐ช๐ฆ๐ด trajectories of the barcoded data.
This repository contains R scripts for data analyses and visualization.
short-read amplicon data visualization suite
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