v0.1.0

🎉 This release contains work from new contributors! 🎉

Thanks for all your work!

❤️ Arman Jahanpour (@rmanaem)

❤️ Sebastian Urchs (@surchs)

❤️ Alyssa Dai (@alyssadai)

Release Notes

[MNT] Release new data model (#82)

We have updated the Neurobagel data model to allow users to specify phenotypic information at the session level (neurobagel/planning#83). This release updates the federation API so it can understand the new node API responses.

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💥 Breaking Changes

• [ENH] Support partial term fetching failures #65 (@alyssadai)
• [ENH] split session query parameter into phenotypic + imaging #64 (@alyssadai)

🚀 Enhancements

• [MNT] Release new data model #82 (@rmanaem)
• [MNT] Switch to using logging for all non-user warnings and errors #77 (@surchs)
• [DOC] Update Copyright holders #71 (@surchs)
• [CI] Update image tag for default build #59 (@alyssadai)
• [CI] Stop pre-commit auto-fixing PRs #57 (@alyssadai)
• [ENH] Handle partial nodes success #55 (@alyssadai)
• [FIX] Update example config to use host.docker.internal instead of localhost #50 (@alyssadai)
• [ENH] partially validate local node JSON config #43 (@surchs @pre-commit-ci[bot])
• [FIX] Fix docker run command in README.md #42 (@alyssadai)
• [ENH] Switch node config format #39 (@alyssadai)
• [REF] Refactor tests #37 (@alyssadai)
• [ENH] Add new query param for nodes that defaults to a prepopulated index #30 (@alyssadai)
• [ENH] Implemented new endpoint to return known node APIs #29 (@rmanaem)
• [CI] Set up coveralls #24 (@rmanaem)
• [MNT] Implemented logic to make sure node URLs end with / #25 (@rmanaem)
• [DOC] Update constraints and example for NB_NODES variable value #22 (@alyssadai)
• [ENH] Changed the favicon to neurobagel logo #20 (@rmanaem)
• [CI] Set up test workflow #17 (@rmanaem)
• [ENH] Added node API vocabulary endpoints and logic #14 (@rmanaem)
• [DOCS] Added link to official docs #16 (@surchs)
• [FIX] Ensure the value of NB_NODES can be properly parsed as a list by the API #11 (@alyssadai)
• [FIX] Fix syntax error in docker workflow and add relevant pre-commit hook #10 (@alyssadai)
• [ENH] Set up federation prototype and CI workflows #9 (@rmanaem @surchs @alyssadai)
• [CI] Set up workflows #7 (@rmanaem)
• [ENH] Turned NEUROBAGEL_NODES to an env var #6 (@rmanaem)
• [MNT] Cleaned up the existing code #3 (@rmanaem)
• [ENH] Very inspired first federation prototype #1 (@surchs)

🐛 Bug Fixes

• [FIX] Expanded error catching during API request federation #74 (@alyssadai)
• [FIX] Handle empty local nodes file #67 (@alyssadai)

⚠️ Pushed to main

• Added pre-commit config file (@rmanaem)
• Added requirements.txt (@rmanaem)
• Initial commit (@rmanaem)

Authors: 4

• @pre-commit-ci[bot]
• Alyssa Dai (@alyssadai)
• Arman Jahanpour (@rmanaem)
• Sebastian Urchs (@surchs)