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Deprecate cloud_env JSON / google_cloud.my_project.json for building inputs
enhancement
New feature or request
#709
opened Aug 12, 2024 by
epiercehoffman
Add check for duplicate records to MainVcfQc
enhancement
New feature or request
#701
opened Jul 30, 2024 by
epiercehoffman
RdTest does not plot variants for which all samples are carriers
#694
opened Jun 28, 2024 by
epiercehoffman
Incorrect mCNV genotype counts in MainVcfQc
bug
Something isn't working
#690
opened Jun 12, 2024 by
mwalker174
Add support for annotating external AF from multiple datasets
enhancement
New feature or request
#678
opened May 28, 2024 by
epiercehoffman
MEI to be calculated in MainVcfQc
enhancement
New feature or request
#667
opened Apr 19, 2024 by
xuefzhao
AD values in Annotation aren't Integers
bug
Something isn't working
#663
opened Apr 3, 2024 by
MattWellie
Annotate GD region overlap in AnnotateVcf
enhancement
New feature or request
#660
opened Mar 29, 2024 by
epiercehoffman
svtk vcfcluster creates lists of INFO values when Number = 1
methods
#659
opened Mar 26, 2024 by
epiercehoffman
Filter allosomal genotypes for samples with unassigned sex
bug
Something isn't working
#658
opened Mar 21, 2024 by
mwalker174
ImportError: dlopen: cannot load any more object with static TLS
#656
opened Mar 15, 2024 by
jingydz
Modification of parameters
documentation
Improvements or additions to documentation
question
Further information is requested
#651
opened Mar 2, 2024 by
andrewruttenberg
Look into higher than expected numbers of large CPX events
methods
#648
opened Feb 27, 2024 by
epiercehoffman
task SDtoBAF calls SiteDepthtoBAF without passing required index file
bug
Something isn't working
#643
opened Feb 12, 2024 by
simojoe
How can I apply downstream filtering steps to the cleaned VCF to further control the false discovery rate?
question
Further information is requested
#615
opened Oct 30, 2023 by
elitefugua
Can't find the vcf_stats file(MergeVcfWideStats.merged_bed_file), how to generate it?
question
Further information is requested
#606
opened Oct 8, 2023 by
jingydz
Tabix crashing in single sample pipeline with long sample ID
bug
Something isn't working
#570
opened Jul 20, 2023 by
mwalker174
GPG (GNU Privacy Guard) key verification failed for two repos when trying to create custom melt docker image
docker
#556
opened Jun 22, 2023 by
am8265
Use END2 for svtk vcf2bed --split-bnd
bug
Something isn't working
#555
opened Jun 20, 2023 by
mwalker174
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