Resolve incorrect mCNV genotype counts for hom-alt #708
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR addresses Issue #690.
Description
Includes the case where CN >= 4 in the condition for counting hom-alt instances.
Testing
hom_gts
total increases in certain rows, while thehet_gts
total decreases in such rows - the sum ofhom_gts
&het_gts
stays the same though.Pre-Merge Changes Required
Remove automated Dockstore image sync for
MainVcfQc.wdl
in development branch.