wgbs
Here are 33 public repositories matching this topic...
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
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Oct 10, 2023 - R
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
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Sep 24, 2021 - Python
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
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Feb 15, 2022 - Python
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
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Mar 28, 2022 - Shell
Differential methylation: Easy, Fast, Identification and ANnoTation
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Dec 18, 2020 - Shell
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
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Jul 7, 2023 - R
TFregulomeR reveals transcription factors’ context-specific features and functions
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Apr 18, 2022 - R
R package to impute methylation within WGBS using machine learning
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Mar 9, 2023 - R
Cluster-based analysis of CpG methylation
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Jan 11, 2024 - Python
An R package for weighted region comethylation network analysis
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Oct 14, 2023 - R
The DKFZ alignment workflow plugin originally developed at the eilslabs
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Oct 5, 2023 - Python
Pipeline for BS-Seq data based on snakemake
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Apr 1, 2022 - Python
A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
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May 15, 2020 - R
Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood
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Jun 24, 2019 - R
An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
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Feb 28, 2020 - Shell
TFregulomeR reveals transcription factors’ context-specific features and functions
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Apr 17, 2022 - R
Snakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit
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Mar 25, 2024 - Python
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