bisulfite-sequencing
Here are 26 public repositories matching this topic...
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
-
Updated
Jun 28, 2024 - Nextflow
Arioc: GPU-accelerated DNA short-read alignment
-
Updated
Jun 24, 2024
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
-
Updated
Jul 31, 2024 - R
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
-
Updated
Mar 31, 2023 - Python
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
-
Updated
Nov 19, 2020 - HTML
Differential methylation: Easy, Fast, Identification and ANnoTation
-
Updated
Dec 18, 2020 - Shell
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
-
Updated
Jul 25, 2024 - C++
Targeted Amplicon Bisulfite Sequencing Analysis Tool
-
Updated
May 8, 2019 - Perl
bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
-
Updated
May 6, 2021 - Java
a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.
-
Updated
Sep 28, 2018 - Python
Pipeline for BS-Seq data based on snakemake
-
Updated
Apr 1, 2022 - Python
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
-
Updated
Aug 17, 2023 - Python
Bisulfite Sequencing Virus integration Finder
-
Updated
Dec 15, 2023 - C
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
-
Updated
Apr 9, 2021 - Python
bisulfite sequencing pattern analysis tool
-
Updated
Sep 14, 2018 - Java
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
-
Updated
Sep 26, 2019 - R
Analyze Whole Genome Bi-Sulfite Sequencing for Grape evolution in response to grafting
-
Updated
Dec 16, 2020
PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.
-
Updated
Feb 7, 2024 - C++
Improve this page
Add a description, image, and links to the bisulfite-sequencing topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the bisulfite-sequencing topic, visit your repo's landing page and select "manage topics."