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37 public repositories
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Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Updated
Aug 6, 2024
Python
An opinionated Cromwell orchestration manager.
Updated
Mar 27, 2023
Python
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
[Experimental] Workflow Definition Language (WDL) to CWL
Updated
Nov 17, 2021
Python
Create WDL documentation using Markdown.
Updated
Oct 1, 2024
Python
A package manager for Workflow Description Language files.
Rust crates for working with Workflow Description Language (WDL) documents.
A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
Updated
Aug 17, 2018
Python
WDL pipelines for the Sentieon tools
Broad fungal method repository
WDL tasks for commonly used BFX tools
Workflow for metagenome assembly
Pipeline to characterize Human Endogenous Retrovirus (HERV) expression
Updated
Jan 23, 2024
Shell
Updated
Aug 30, 2024
TypeScript
A pipeline for mitochondrial mutation calling
Updated
Jun 19, 2020
HTML
A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions
Updated
Sep 19, 2024
Shell
WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH (SunHao) .
A workflow for processing metagenomics data sets using Centrifuge. Category:Single-Sample
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