My work during internship in Walter+Eliza Hall Institute of Medical Research
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Updated
Nov 3, 2018 - HTML
My work during internship in Walter+Eliza Hall Institute of Medical Research
A repository containing code for a manuscript intended for Molecular Ecology.
Structural Variants in cell-free tumor DNA
Integrated analysis of Structural and Copy Number Variants on clinical targeted sequencing data
Garvan KCCG Student Summer Research Project #1 Benchmarking structural variant callers on whole genome sequencing data
Code, analysis, and results for Hawley, Zhou, et al., Cancer Research, 2021.
Pipeline to analyze structural variants producing VCF files, then merge them and annotate if in Exon.
Testing structural variant (SV) callers for illumina germline whole genome sequence (WGS) data (human).
In this repository I backup the pipelines I write for the project I am involved
The experiments performed in State-of-the-art structural variant calling: What went conceptually wrong and how to fix it?
A snakemake pipeline to call structure variants from ONT data
Structural variant calling tutorial using long-reads.
2110581 Bioinformatics I project - Structural variant detection
Genome assembly and variant benchmarks for Chinese Quartet
Germline structural variant calling pipeline for short read WGS datasets
Long read structural variants in rare disease cohort
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
A nextflow variant benchmarking pipeline - premature
Snakemake-based workflow for generating artificial genomes with structural variants
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