This relates to the Genomics Aotearoa clinical genomics project undertaken by the human genomics group at ESR. Testing structural variant (SV) callers for illumina germline whole genome sequence (WGS) data (human) and figuring out how to ingest the SV vcf files into scout.
- The raw data for this project is stored/backed up at
/NGS/clinicalgenomics/archive/2022/results/GA_clinical_genomics/wellington/phase_2/bams/
on ESR's production network
- This analysis was for the most part carried out at
/NGS/scratch/KSCBIOM/HumanGenomics/test_SV_callers/
on ESR's production network - A minimal version of the analyses were stored/backed up at
/NGS/clinicalgenomics/archive/2022/results/test_SV_callers/
on ESR's production network
- The github repository for this project is public
- For other general queries about this project beyond the bioinformatics, contact the current (2022) representatives of the ESR genomics group, Donia Macartney-Coxson (Donia.Macartney-Coxson@esr.cri.nz) and/or Joep de Ligt (joep.deligt@esr.cri.nz)
Find the github repository for this project at: https://github.com/leahkemp/test_SV_callers
No results webpage