Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
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Updated
Aug 2, 2024 - C++
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
Tutorial for performing redundancy analysis
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
A tool for downloading HLA alleles, epitopes and frequencies
Long read structural variants in rare disease cohort
Complexity of Infection Estimation with Allele Frequencies
A python library to develop genomic data simulators
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.
Identification of cancer-causing variants
A tool to find reads supporting/opposing structural variant breakpoints
Calculate allele frequencies from a sequence multialignment.
Code for NCD1 and NCD2 statistics to detect long-term balancing selection
Scripts and data processing notes for Russian exome sequencing AF paper
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
A command-line parser for VCF files designed for population genetics analyses.
A Python script that generate population genotype frequency file from 1000G data
An R script for generating allele frequencies from DNA/amino acid sequence alignments.
Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.
ALFRED Revival is an open-source project to rebuild the allele frequency database created and hosted by the Kidd Lab at Yale University. Due to a lack of ongoing support for the project, the original ALFRED has become difficult to use. ALFRED Revival is an interface utilizing modern technologies to interact with the new ALFRED Revival database.
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