Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
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Updated
Aug 15, 2024 - Rust
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
Detect novel (and reference) STR expansions from short-read data
Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Microsatellite genotyping
Computational, High-throughput Individual Identification through Microsatellite Profiling
Supporting code for the microsatellite genotyping paper introducing CHIIMP
Allele-specific expression (ASE) for short tandem repeats (STRs)
A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.
🧬 A curated list of awesome resources for repeat DNA research
Detection and classfication of short tandem repeats in read data
🧬 recombination and mutation rates inference from polymorphisms (STRs, SNPs and INDELs) along the X chromosome
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