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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    223 340

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 186 93

  3. dragonstar2019 dragonstar2019 Public

    134 98

  4. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 99 35

  5. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 97 8

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 88 54

Repositories

Showing 10 of 78 repositories
  • LongReadSum Public
    WGLab/LongReadSum’s past year of commit activity
    C++ 10 MIT 2 7 1 Updated Aug 19, 2024
  • GestaltMML Public
    WGLab/GestaltMML’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 12, 2024
  • DeepMod2 Public

    DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

    WGLab/DeepMod2’s past year of commit activity
    Jupyter Notebook 32 MIT 2 9 0 Updated Aug 9, 2024
  • LIQA Public

    Long-read Isoform Quantification and Analysis

    WGLab/LIQA’s past year of commit activity
    Python 39 12 0 0 Updated Aug 8, 2024
  • LINE-Expression-LRS Public

    Bioinformatics pipeline for the identification and quantification of active, full-length Long INterspersed Elements (LINEs)

    WGLab/LINE-Expression-LRS’s past year of commit activity
    Shell 0 0 1 0 Updated Aug 7, 2024
  • Project_SPARK_de_novo_analysis_pipeline Public
    WGLab/Project_SPARK_de_novo_analysis_pipeline’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 20, 2024
  • doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    WGLab/doc-ANNOVAR’s past year of commit activity
    223 340 116 0 Updated Jul 18, 2024
  • QuantitativeGenomics2024 Public Forked from WGLab/QuantitativeGenomics2023

    Materials for Quantitative Genomics 2024 workshop

    WGLab/QuantitativeGenomics2024’s past year of commit activity
    0 MIT 2 0 0 Updated Jul 17, 2024
  • NanoRepeat Public

    NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

    WGLab/NanoRepeat’s past year of commit activity
    Python 15 MIT 1 3 0 Updated Jul 17, 2024
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jul 14, 2024
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