Trainable PyTorch framework for developing protein, RNA and complex models.
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Updated
Jan 20, 2024 - Python
Trainable PyTorch framework for developing protein, RNA and complex models.
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
Script to facilitate the making of horizontal scripts
Software for predicting translation initiation rates in bacteria
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
[ICPR 2024] Knowledge from Large-Scale Protein Contact Prediction Models can be Transferred to the Data-Scarce RNA Contact Prediction Task
Multiscale dataset of non-coding RNA structures, including sequences, secondary structures, non-canonical interactions, 3D geometrical descriptors, and sequence homology.
Construct atomistic (AA) model from Three-Interaction-Site (TIS) coarse-grained model of RNA/DNA
Bialignment of RNAs and proteins
NucleoSeeker - Precision filtering of RNA databases to curate high-quality datasets
Final Project : Algorithms and Object-Oriented programming. Secodary structure of ARN molecules
Architecture of Large Projects in Bioinformatics (University project)
Solving RNA Folding Problems with Linear/Integer Programming
Extension for creating visualizations of distance restraints in PyRy3D Chimera Extension
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