Skip to content
@kiharalab

Kihara Protein Bioinformatics Laboratory

Software developed in the Kihara Lab

Popular repositories Loading

  1. ACC-UNet ACC-UNet Public

    ACC-UNet is A Completely Convolutional UNet model inspired from transformer-based UNets

    Python 97 13

  2. GNN_DOVE GNN_DOVE Public

    Code for "Protein Docking Model Evaluation by Graph Neural Networks"

    Python 56 22

  3. DOVE DOVE Public

    A Deep-learning based dOcking decoy eValuation mEthod

    Python 54 13

  4. CryoREAD CryoREAD Public

    CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

    Python 28 4

  5. DiffModeler DiffModeler Public

    DiffModeler: a diffusion model based protein complex structure modeling tool.

    Python 24 3

  6. Emap2sec Emap2sec Public

    Emap2sec is a computational tool to identify protein secondary structures

    Jupyter Notebook 16 7

Repositories

Showing 10 of 43 repositories
  • AF2_Distaf Public Forked from google-deepmind/alphafold

    Embedding generation for Distance-AF using full MSA

    kiharalab/AF2_Distaf’s past year of commit activity
    Python 0 Apache-2.0 2,195 0 0 Updated Aug 21, 2024
  • ColabFoldDAQ Public Forked from sokrypton/ColabFold

    Making Protein folding accessible to all!

    kiharalab/ColabFoldDAQ’s past year of commit activity
    Jupyter Notebook 0 MIT 474 0 1 Updated Aug 17, 2024
  • DeepMainMast Public

    DeepMainmast

    kiharalab/DeepMainMast’s past year of commit activity
    C 8 GPL-3.0 2 0 1 Updated Aug 12, 2024
  • Emap2secPlus Public

    Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning

    kiharalab/Emap2secPlus’s past year of commit activity
    Jupyter Notebook 16 GPL-3.0 9 0 0 Updated Aug 1, 2024
  • CryoREAD Public

    CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

    kiharalab/CryoREAD’s past year of commit activity
    Python 28 4 0 0 Updated Aug 1, 2024
  • Emap2sec Public

    Emap2sec is a computational tool to identify protein secondary structures

    kiharalab/Emap2sec’s past year of commit activity
    Jupyter Notebook 16 GPL-3.0 7 2 0 Updated Jul 31, 2024
  • DAQ Public

    DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps

    kiharalab/DAQ’s past year of commit activity
    C 12 GPL-3.0 1 0 0 Updated Jul 31, 2024
  • VESPER Public
    kiharalab/VESPER’s past year of commit activity
    C 9 GPL-3.0 3 0 0 Updated Jul 31, 2024
  • kiharalab/ComplexModeler’s past year of commit activity
    Python 2 0 0 0 Updated Jul 30, 2024
  • DiffModeler Public

    DiffModeler: a diffusion model based protein complex structure modeling tool.

    kiharalab/DiffModeler’s past year of commit activity
    Python 24 3 0 0 Updated Jul 30, 2024

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…