Implementation of the tree triplet distance algorithms from our paper "Cache oblivious algorithms for computing the triplet distance between trees", published in ESA 2017
-
Updated
Jul 9, 2017 - Objective-C
Implementation of the tree triplet distance algorithms from our paper "Cache oblivious algorithms for computing the triplet distance between trees", published in ESA 2017
Example files for Benin NGS capacity building project
A pipeline to construct phylogenetic tree using BUSCOs
A couple of assignments I did for a course in computational (molecular) biology @ University of Warsaw
Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.
The prog is written to construct the phylogenetic tree (dendrogram) based on DNA/Protein sequences of species given in a dataset using Agglomerative and Divisive Hierarchical Clustering and to compare Agglomerative and Divisive methods
web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.
Script for sorting FASTA sequences by clade in a given tree topology.
A feature rich and easy to use phylogenetic tree editor
A stand-alone tool for evaluating simple statistics of orthologs
Draw a phylogenetic tree, along with a table of metadata
Code and data description to reproduce Tietje et al. (2022) Global variation in diversification rate and species richness are unlinked in plants (https://doi.org/10.1073/pnas.2120662119)
Script for creating a tANI distance matrix for use in phylogenetic reconstruction.
Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.
🚿A Tidy Tool for Phylogenetic Tree Data Manipulation
Fungal Identification Pipeline
Add a description, image, and links to the phylogenetic-tree topic page so that developers can more easily learn about it.
To associate your repository with the phylogenetic-tree topic, visit your repo's landing page and select "manage topics."