SARS-CoV-2 variant growth rates and frequency forecasts
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Updated
Sep 12, 2024 - Python
SARS-CoV-2 variant growth rates and frequency forecasts
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Nextstrain build for mpox virus
Nextstrain build for novel coronavirus SARS-CoV-2
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
Add a description, image, and links to the nextstrain topic page so that developers can more easily learn about it.
To associate your repository with the nextstrain topic, visit your repo's landing page and select "manage topics."