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Pull requests: nextstrain/ncov

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Pull requests list

Use weighted sampling for other builds
#1151 opened Aug 26, 2024 by victorlin Loading…
2 of 3 tasks
@victorlin
Fix Asia weighted sampling
#1150 opened Aug 26, 2024 by victorlin Loading…
2 tasks done
@victorlin
Elevate lineage XDV.1 as clade 24D and lineage KP.3.1.1 as clade 23E
#1149 opened Aug 25, 2024 by trvrb Loading…
3 of 9 tasks
4
Gray out early clades
#1132 opened Jul 27, 2024 by trvrb Loading…
1 task
@trvrb
3
Allow build-specific --narrow-bandwidth param in frequencies
#1130 opened Jul 26, 2024 by trvrb Loading…
@trvrb
1
Demo prefilter rule for Nextstrain GISAID build
#1128 opened Jul 25, 2024 by huddlej Loading…
4 tasks
inline root sequence
#1111 opened May 30, 2024 by rneher Loading…
Document example accepted docker image formats for action
#1105 opened May 3, 2024 by victorlin Loading…
1
@victorlin
Include profile for open 21L builds
#1101 opened Mar 9, 2024 by trvrb Loading…
1 task done
1
Update Suffolk lat/long
#1100 opened Feb 27, 2024 by joverlee521 Loading…
Introduce minimum augur version check
#1070 opened May 16, 2023 by jameshadfield Loading…
3
Allow specification of container image in workflow rebuild-100k.yml
#1067 opened May 5, 2023 by corneliusroemer Loading…
2
Soft-mask (just for topology) 486P site 23018
#1060 opened Apr 11, 2023 by corneliusroemer Loading…
4 tasks
2
Allow a list of sequence exclusion files, instead of just one
#977 opened Jul 11, 2022 by sacundim Loading…
1
Memory resource definitions
#953 opened May 25, 2022 by tsibley Loading…
3 tasks
1
2
Fix annotate metadata with numeric strains
#952 opened May 25, 2022 by huddlej Loading…
2 tasks done
1
@huddlej
6
Remove whitespace indents from large Auspice JSONs
#944 opened May 9, 2022 by fanninpm Loading…
4 tasks
4
Restrict 6m builds to tips in the last 6m (post-tree-building)
#934 opened Apr 28, 2022 by jameshadfield Loading…
7
Fill in more lat/long data from the OpenStreetMap name-to-location API
#920 opened Apr 15, 2022 by jgadling Loading…
2
Add parameter to enable overriding tree args
#871 opened Feb 16, 2022 by huddlej Loading…
4 of 5 tasks
4
Remove redundant include strains bug Something isn't working
#843 opened Jan 25, 2022 by huddlej Loading…
2 tasks done
@huddlej
2
#657 Validate input files from config file
#821 opened Dec 15, 2021 by emontag47 Loading…
4 tasks
add submitters to footer filters;
#738 opened Sep 28, 2021 by eharkins Loading…
7
Implement subsampling via a script
#711 opened Aug 23, 2021 by jameshadfield Loading…
1 task
@huddlej @jameshadfield
Refactoring and Optimization
#678 opened Jul 2, 2021 by abnsy Loading…
ProTip! Exclude everything labeled bug with -label:bug.