Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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Updated
Jul 19, 2024 - Rust
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Metabolic Engineering Workbench
Implementation of geometric phase analysis (GPA) in C++
⚡🧠A finite element Python implementation
An RNA virus strain-level identification tool for short reads.
A Schrödinger-Poisson solver for 2D materials with 1D interfaces (wires)
Computes the electronic band structure of bulk ZB semiconductor with k.p models WITH STRAIN
GAN/convolutional and Transformer models to predict missing mechanical information given limited known data in part of the domain, and further characterize the composite geometries from the recovered mechanical fields for 2D and 3D complex microstructures
Module of the SailTrack system for measuring the forces acting on the boat maneuvers.
Bash scripts to plot coulomb results on gmt
A finite element code to solve for the dynamic fragmentation of concrete at different strain rates. A bi-linear cohesive zone model is used for the simulation
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
Planetary crustal and mantle properties, and lithospheric displacements, stress and strain, calculations in spherical harmonics.
FEM 1D example with Python
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