Nextstrain build for novel coronavirus SARS-CoV-2
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Updated
Sep 12, 2024 - Python
Nextstrain build for novel coronavirus SARS-CoV-2
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
Nextstrain build for mpox virus
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
SARS-CoV-2 variant growth rates and frequency forecasts
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
BA.2.86 project with Sigal lab
Spike-only SARS-CoV-2 Nextstrain build
Nextstrain build configuration for maintaining https://nextstrain.org/community/aicbu/ncov/srilanka
Add a description, image, and links to the nextstrain topic page so that developers can more easily learn about it.
To associate your repository with the nextstrain topic, visit your repo's landing page and select "manage topics."