Annotation and Ranking of Structural Variation
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Updated
Aug 8, 2024 - Tcl
Annotation and Ranking of Structural Variation
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
ClassifyCNV: a tool for clinical annotation of copy-number variants
Copy number variant caller and depth visualization utility for PacBio HiFi reads
Short reads aligner for NIPT/CNV
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data
Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
An R package to integrate and analyze CNV calling results from multiple methods in a uniformed and standardized manner
Official code repository for JAX-CNV
Workflow for Sequenza, cellularity and ploidy
Dzyaloshinskii-Moriya interaction for crystallographic class Cnv
R Package to compare copy number variant (CNV) results from multiple samples/methods
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