Workflow for Sequenza, cellularity and ploidy
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Updated
Jun 27, 2024 - R
Workflow for Sequenza, cellularity and ploidy
Haplotype-aware CNV analysis from single-cell RNA-seq
WisecondorX — An evolved WISECONDOR
Benchmarking records for scRNA-seq CNV detection.
CNV-detection algorithm developed with large Dataset
Mining CNV based on rice Nipponbare genome using resequencing data.
ampliCNV is a Python 3.x package for copy number (CNV) variation detection on whole exome sequencing (WES) data from amplicon-based enrichment technologies.
Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.
Cobalt is a tool to detect copy-number variants from next generation sequencing (NGS) data
a tool for predicting mitochondrial DNA deletions using soft-clipping
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
Docker image for CNVnator on ubuntu 16.04
Fork of the CoNVaDING software - Copy Number Variation Detection In NGS Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage NGS data.
ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
Materials & Methods for CNV calling with Genalice software against a benchmark dataset
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