Update python versions and dependencies

[eberrigan]

Description

• The conda package for Windows and Linux currently uses Python 3.7.12 which is at its end-of-life. We would like to use the latest Python version possible for our conda build.
• TensorFlow 2.7.0 is the current working version of TensorFlow in SLEAP for Windows and Linux. TensorFlow 2.7.0 is compatible with Python 3.7 - 3.9. TensorFlow 2.7.0 cannot be pip installed with Python 3.10.
• We are currently using PySide 2 in both the Windows/Linux and Mac conda packages. We would like to upgrade this to PySide 6.
• PySide 6 is dependent on SciPy which is dependent on numpy.
• The Mac conda package uses tensorflow-macos==2.9.2, is not compatible with Python 3.11 and 3.12.
• We will update the PyPI build dependencies as well.
• scikit-video is replaced with imageio.v2. Code will be refactored for VideoWriter and tests will be made for new VideoWriter using imageio.v2 in a new PR.
• QtCharts is problematic. We are removing it and using matplotlib instead. Code will be refactored for LossViewer to use MplCanvas with added functionality for plotting and tests will be made in a future PR. The QT backend for matplotlib will be updated as well.

Types of changes

• Bugfix
• New feature
• Refactor / Code style update (no logical changes)
• Build / CI changes
• Documentation Update
• Other (explain)

Does this address any currently open issues?

• The Mac GUI is breaking in the latest pre-release No module named 'work' #1803, Scrolling to zoom crashing GUI in v1.4.1a1 #1802.
• This is following up many dependency updates in pre-release v1.4.1a1.

Outside contributors checklist

• Review the guidelines for contributing to this repository
• Read and sign the CLA and add yourself to the authors list
• Make sure you are making a pull request against the develop branch (not main). Also you should start your branch off develop
• Add tests that prove your fix is effective or that your feature works
• Add necessary documentation (if appropriate)

Thank you for contributing to SLEAP!

❤️

Summary by CodeRabbit

Summary by CodeRabbit

• Dependency Updates

  • Updated dependencies to support Python 3.10, including numpy, scipy, scikit-learn, and pyside6.
  • Modified TensorFlow dependency to a newer version to reflect ongoing development changes.
  • Added new dependencies for imageio and imageio-ffmpeg.

• Environment Configuration

  • Updated Conda environment files to ensure compatibility with Python 3.10 and the latest library versions. Added new channels, sleap-deps and sleap-deps/label/dev, for improved package management.

• New Features

  • Enhanced data visualization in the training monitor by switching from QtCharts to Matplotlib, improving user experience.

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Walkthrough

The changes enhance the sleap project's compatibility with Python 3.10 across various configuration files. Key updates include modifying package versions, replacing pyside2 with pyside6, and introducing new dependencies like imageio. The addition of the sleap-deps channel improves package management and streamlines the development environment, promoting usability and functionality. Furthermore, the plotting mechanism has transitioned from QtCharts to Matplotlib for improved visualization.

Changes

File/Group	Change Summary
.conda/..., .conda_mac/..., environment.yml, environment_mac.yml, environment_no_cuda.yml, .conda/meta.yaml	Added sleap-deps channel; updated versions of numpy, pyside6, scipy, and scikit-learn for Python 3.10 compatibility. Included new dependencies like imageio and commented out outdated ones.
.github/workflows/...	Modified workflow triggers to include configuration files and updated Python version from 3.7/3.9 to 3.10 for compatibility across environments.
sleap/gui/widgets/training_monitor.py	Replaced QtCharts with Matplotlib for plotting, enhancing the visualization component of the application.
sleap/io/videowriter.py	Removed unnecessary import for skvideo, simplifying the VideoWriterSkvideo class.

Poem

In the meadow where code takes flight,
Python 3.10 gleams, oh what a sight!
With sleap-deps bringing new cheer,
Dependencies dance, our goals are clear.
Hoppy updates make our dreams come true,
A joyful journey, all thanks to you! 🐇✨

---

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[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 73.59%. Comparing base (7ed1229) to head (bdddd80).
Report is 21 commits behind head on develop.

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #1841      +/-   ##
===========================================
+ Coverage    73.30%   73.59%   +0.29%     
===========================================
  Files          134      135       +1     
  Lines        24087    24227     +140     
===========================================
+ Hits         17658    17831     +173     
+ Misses        6429     6396      -33     

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