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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 409 96

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 11 8

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 15

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 8

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 6 1

Repositories

Showing 10 of 42 repositories
  • VNL-Brax-Imitation Public

    VNL Implementation of Rodent Imitation Learning

    talmolab/VNL-Brax-Imitation’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Jul 16, 2024
  • sleap-deps Public

    Packages necessary for sleap build maintained by the SLEAP team.

    talmolab/sleap-deps’s past year of commit activity
    0 Apache-2.0 0 0 1 Updated Jul 16, 2024
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    talmolab/sleap-io’s past year of commit activity
    Python 11 BSD-3-Clause 8 10 5 Updated Jul 16, 2024
  • stac-mjx Public

    Implementation of STAC using MJX for GPU acceleration. Part of VNL project.

    talmolab/stac-mjx’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 13 2 Updated Jul 16, 2024
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 409 96 78 (4 issues need help) 29 Updated Jul 16, 2024
  • conda_packages Public
    talmolab/conda_packages’s past year of commit activity
    Shell 2 Apache-2.0 0 0 1 Updated Jul 15, 2024
  • internal-dockerfiles Public

    dockerfiles for talmo

    talmolab/internal-dockerfiles’s past year of commit activity
    Dockerfile 0 1 0 2 Updated Jul 12, 2024
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 4 GPL-3.0 0 12 0 Updated Jul 3, 2024
  • multi-animal-dannce Public Forked from tqxli/dannce-pytorch
    talmolab/multi-animal-dannce’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Jul 2, 2024
  • sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    talmolab/sleap-roots’s past year of commit activity
    Python 8 BSD-3-Clause 0 2 0 Updated Jun 27, 2024
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