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LSTrAP-denovo is an easy-to-use pipeline to assemble and annotate transcripts for species without genome / genomic annotations using publicly available RNA-seq data.

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Name		Name	Last commit message	Last commit date
Latest commit History 412 Commits
assembly		assembly
data		data
download		download
helper		helper
main		main
preprocess		preprocess
setup		setup
.gitattributes		.gitattributes
.gitignore		.gitignore
LICENSE		LICENSE
README - Copy.md		README - Copy.md
README.md		README.md

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Welcome to LSTrAP-denovo!

For documentation in implementing the pipeline. Refer to our Github wiki.

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LSTrAP-denovo is an easy-to-use pipeline to assemble and annotate transcripts for species without genome / genomic annotations using publicly available RNA-seq data.

bioinformatics rna-seq gene-expression clustering-algorithm unsupervised-machine-learning rna-seq-pipeline pfam-annotation transcriptomics-assembly

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Python 100.0%