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adding link to colored tree
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linsalrob committed Apr 23, 2017
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Expand Up @@ -239,6 +239,8 @@ That script submits another job to the cluster, and then you need to run this on
qsub -cwd -S /bin/bash -V -o sge_output/ -e sge_output/ -hold_jid PREV_JID ~/PhageProteomicTree/bash_script4.sh
```

Once the analysis is complete, we visualize the tree in [FigTree](http://tree.bio.ed.ac.uk/software/figtree/) to add the colors. That results in the [colored tree file](renamed_full_colored.tree)

![Phage Proteomic Tree of the Spounaviridae](images/reannotated_genome_tree.png)


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